BAC Information

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BAC

Clone NameMSMg01-129E01
Chromosome2 (Build37)
Map Location 38,126,337 - 38,126,583
singlet/doubletsinglet
Overlap geneDennd1a
Upstream geneOlfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491
Downstream geneLOC100040947, Lhx2, Nek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129E01.T7 (MSMg01no129_e01.b1)MSMg01-129E01.TJ (MSMg01no129_e01.g1)
ACCAG337309AG337310
length739775
length of high quality
(start - end)
249 (46 - 294)180 (137 - 316)
definitionCHROMAT_FILE: MSMg01no129_e01.b1 PHD_FILE: MSMg01no129_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:36 2005CHROMAT_FILE: MSMg01no129_e01.g1 PHD_FILE: MSMg01no129_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:42:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACTATTCGAAGAGGATCCGCGGAATTCCAGGACTTCCCGAACGACAC
AGAGAAACCCTGTCTAGAAAAACTAAAAAAATAATAGATATGATGTCTTT
TAAGATGTCCTCTATATATAACAAGTTTGCCCTTCCTCCCACCCCTCTAT
CTGCCAATTAAAGAGTCCTAAAGTCCCTTTGGTTCCCTACCCATCACCGG
ATAACTGATTCCCAAACTATCTTCAGTTCCTGTTTGGGTTTCTATTGCTG
TGATCAAACTTGACCAACAGCAAATTGTGGAGGCTTATACTTCTATGCTA
TAGCTCATCATCCAAGGCAGGAATAGGAACTCTTATAGGTCAGGAACCTG
GAGGCAGGAACTGGCACAGAATCCATGGTCGAATTGCTGCTTACTGGTTT
TTCCCACTTGATCTGCTCCGCTCTGCTTTCCCATAGTAACCTGAATCACC
ACTCCTCCGCGTATGGTTCCTTTCCTCTTTGTTATCCCCTCTTTCCCTCT
ACCCCTTCATTAATCCACGACAATGCCCTCCATAGTCTTGCCCTACCTCT
ACGACTTTTACCGCATAACTCTTTCTCCCCTTGTATGCTTCCCCTCCCTC
CCCAATGTGATCCTAACTTTGTTGTCCAAATAACCTATACTCCCTTTCTC
CCACTTCGTTCTTCTCCCTTCTTTCTTTCTACTTCCTTTCTTCCCCATTC
TTTTTTTCTTCTTTTCCCACTTCGCCAAACCTGCTCTCT
TCCTTTCCCACCTTTCTTTTTTCCCTTATATATTTTTCTAAACTTTCTCT
TAATTTTCTCCCCCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCCGCGAAATTCAAGGAAGGA
ATTAAAGCAGCGCTTTGAGAAAATGCTACTTAATGGCCTGCTCCTCGTGG
CTTGCTAAGCCTGCTTTCTTTCTCTTTCTTCTTTTTTTTGCAGGGGTGGG
TGGGCAGGAATTTAATCAAACAAGCCAAATCCCATGTCATCATCTGATTC
CTTCTTGTCCACAACAGGCAGCAAAAGCCAGCCTGCTTCCCTATACAACC
TATGACCACCTAGCTGCCCAGGAATGGCAGTGCCCTCATTGAGCTGTTTC
CTCCCACACCATTAATCTATTAAGAAAACGGCCCACAGACTTGTTCTATA
CCCCCTTTTTCAATTGAGGCTCCCTCTTCTCACACGACCCATACTTGAGT
TTGGTTCGAAAAATACATACCAAATTAAAACCCAACCCCGCTAGCACACC
TAATAAATACACCGTTTTCTGTCCCCAGTCCTGTACAAAATCCCCCCCCA
CGAGTTTTAGTTAGGAAAGCTATGATCCCTCCACCTCCTTATATTCCCTG
ACTCTTTTGCCCCCCACTATTATCTGTATATAGCCCCTATTAACCTGTTC
ATATGACCTCCGAATCAAAGTACTTCTAATTTTTGACGCCATAGCTGCCG
CAACTTAATTTCACTCCGTTTGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_e01.b1 MSMg01no129_e01.b1 CHROMAT_FILE:
MSMg01no129_e01.b1 PHD_FILE: MSMg01no129_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:36 2005
         (249 letters)



>mm_chr2_38126137_38126784
          Length = 648

 Score =  426 bits (220), Expect = e-124
 Identities = 241/248 (97%), Gaps = 1/248 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gacacagagaaaccctgtctagaaaaactaaaaaaataatagatatgatgtcttttaaga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gacacagagaaaccctgtctagaaaaactaaaaaaataaaagatatgatgtcttttaaga 260

                                                                       
Query: 61  tgtcctctatatataacaagtttgcccttcctcccacccctctatctgccaattaaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcctctatatataacaagtttgcccttcctcccacccctctatctgccaattaaagag 320

                                                                       
Query: 121 tcctaaagtccctttggttccctacccatcaccggataactgattcccaaactatcttca 180
           |||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 321 tcctaaagtccctttggt-ccctacccatcacgggaaaactgattcccaaactatcttca 379

                                                                       
Query: 181 gttcctgtttgggtttctattgctgtgatcaaacttgaccaacagcaaattgtggaggct 240
           |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct: 380 gttcctgtttgggtttctattgctgtgatcaaacatgaccaaaagcaaattggggaggct 439

                   
Query: 241 tatacttc 248
           ||||||||
Sbjct: 440 tatacttc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)