Query= MSMg01no129_f17.b1 MSMg01no129_f17.b1 CHROMAT_FILE:
MSMg01no129_f17.b1 PHD_FILE: MSMg01no129_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:44 2005
(366 letters)
>mm_chr2_159271277_159272042
Length = 766
Score = 640 bits (331), Expect = 0.0
Identities = 355/363 (97%), Gaps = 2/363 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcatattcg-agtgaccacaaccataaaattatttgtgttgctacttcatagc 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcatatt-gtagtgaccacaaccataaaattatttgtgttgctacttcatagc 263
Query: 64 tgtaattttgctcctcttatgaattataatgcaaatatatttggagatagaggtttggcg 123
|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 tgtaattttgctactcttatgaattataatgcaaatatatttggaggtagaggtttggca 323
Query: 124 aagcagtagtgacccacaggttgagagttgctgctctagatgaactgagggtttgtgaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagcagtagtgacccacaggttgagagttgctgctctagatgaactgagggtttgtgaaa 383
Query: 184 tcaaggatcccattctgacagtcagaaggacagttagacagaaggtgggacatgttgagc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaaggatcccattctgacagtcagaaggacagttagacagaaggtgggacatgttgagc 443
Query: 244 tgaaatttcgtgggctgagacacaaagacggtttctacacgctaggattctataagcaat 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaatttggtgggctgagacacaaagacggtttctacacgctaggattctataagcaat 503
Query: 304 gtctgcctgttgttacaagccctgcctctcatcttgcgtgtgaccttggacatctgactc 363
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtctgcctgttggtacaatccctgcctctcatcttgcgtgtgaccttggacatctgactc 563
Query: 364 agg 366
|||
Sbjct: 564 agg 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no129_f17.g1 MSMg01no129_f17.g1 CHROMAT_FILE:
MSMg01no129_f17.g1 PHD_FILE: MSMg01no129_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:42:44 2005
(469 letters)
>mm_chr2_159362644_159363512
Length = 869
Score = 783 bits (405), Expect = 0.0
Identities = 452/469 (96%), Gaps = 5/469 (1%)
Strand = Plus / Minus
Query: 1 tgggaagtaggaagaccaactcagtggctcttcaggttcagagaatacttcgaaatgcac 60
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 514 tgggaagtaggaagaccaactcagtggctcttcaggttcagagagtagttcgaaatgcac 455
Query: 61 caaaaaatttcagtcaatgtttggagtttggatcctacctgaagagtggaaagtggaagg 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 454 caaaaaatttcagtcaatgtttggagtttggatccgacctgaagagtggaaagtggaagg 395
Query: 121 ctttgctttcaaccttgtgtcattgacaggaatttctggtctctatgtttgtggggctgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctttgctttcaaccttgtgtcattgacaggaatttctggtctctatgtttgtggggctgt 335
Query: 181 aagcctgagtttctcactgatggaagactatgctgatttcattgccatggcaacccacac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aagcctgagtttctcactgatggaagactatgctgatttcattgccatggcaacccacac 275
Query: 241 catcaatcatccaaagatgaaccattgagatgaaactcacaatcttatatggcttagtat 300
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 catcaatcatccaaagatgaaccattgagatgaaactcacaatcttatacagcttagtat 215
Query: 301 ggaggtgattcccctcccacacacacacacacacctacccactgttgctatcttatactg 360
|||||||||||||| |||| || ||| | ||||||||||||||||||||||| |||||
Sbjct: 214 ggaggtgattcccc---cacatacccac-c-cacctacccactgttgctatcttgtactg 160
Query: 361 gtcaaagtcagagcttctgcctcactcaagggaaaggatcactaagacacagatctaagg 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gtcaaagtcagggcttctgcctcactcaagggaaaggatcactaagacacagatctaagg 100
Query: 421 ggtggaaatccctgtgccatctatagaactgccttccatggtctttctg 469
|| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 99 ggaggaaatccctgtgccatctatagaactgccttacaaggtctttctg 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
