CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTCTGTCTTACTGCTTTTTGTTTGTTTGTTTGTTTGTTTTTGTTTT
TTTCAAAGAACCAGCTCTTGGTTTAATTGCTTCATTGTATTGTTTTCTTT
GTTTCTGATTGATTTTTGACTTGATTTTGATTATTTTCTGTCTTCTAGTC
CTCTTTGGTGTGCTTGTTTTTTTTTTTTTAATACCCTAAAGCTTTCTACT
ATATTTTTAACTTGCTGGTATGAGAACTTTGTAATTTATTTATGGAGGCA
CTTAGTGCTATGAACTTTCTTCTTAGCACTGCTTTCATTTGTGTCCCATA
AATACTGGTGTGGTGTGTCTGTATGTCCATTAAATTCTAGGAAGTCTTTA
ATTTCTTTGTTCATTTCTTTCATGACGCAGAAATTATTGGTTAAAATGTT
CAATCTCCATGAGTGTGTCGGCTTTCTGGTGTTTCTGCTGTTGTTGAAAC
CCAGCTTTAATCCATGGTGGTTTGATAAGATACAAGGAATTATTCCACAT
TTTTTTGTATCTATTTATTCAGTTTTTAATTAGCCTGATCTTTTCTGTTT
TCCCTCTGGCTTAAGACATCTTGAAAGCATATTAGTTCACAAACCAAAAG
GGCTAATACATACTGTGGACAATCCAGAATTCTCTGTTGTTAAATTTATT
TAACAAACGTTGACCACAATGTAATTATCTGTTTTTGCAGTCCTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGATTTTTATCATG
AATGGGTGTTGATTTTGTCAAATGATTTTTCCGCATCTAACAAGATGATC
ATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATCACGTTGATGGA
TTTCCATATATTAAACCATCCCTGCATCCTTGGAATGAAACGAACTTGGT
CAGGATGGATGATTGTTTTAATGTGTTCTTGAATTCGGTTAACAAGAATT
TTATTGAATATTTTTGCATCGATATACATAAGGGAAATTGGTCTAAAGTT
CTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAAACGTGG
CTTCATAGAATAAGTTTGGCACAGTAACTTCTGCTTCTATTTTTGTGGAA
TAGTTTGTGAAGAACTGGAATTAGATAGATCTTCTTTCAAAGTCTGATAG
AACTCTGCACTAAACTCATCTGGTCCTGGGCTTTTTTTGGTTGGCAGGCT
ATTAATAACTTCTTCTATTTCTTTAGGAGATACAGGACTGTTTAGATCAT
TAACCTGATCCTGATTTAACTTTGGTACCTCGTATCTGTCTAGAAATTTG
TCCATTTCATCCAGATTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAA
GGATCTGATGGCACTGTGGATTTCTTGAGGATCTGTTGTTATGTCT

Query= MSMg01no129_i23.b1 MSMg01no129_i23.b1 CHROMAT_FILE:
MSMg01no129_i23.b1 PHD_FILE: MSMg01no129_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:01 2005
         (690 letters)



>mm_chr2_97910199_97911288
          Length = 1090

 Score = 1160 bits (600), Expect = 0.0
 Identities = 661/692 (95%), Gaps = 20/692 (2%)
 Strand = Plus / Plus

                                                                       
Query: 15  ggaattctctgtcttactgctttttgtttgtttgtttgtttgtttttgtttttttcaaag 74
           ||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattctctgtcttactg-ttttt---tgtttgtttgtttgtttttgtttttttcaaag 258

                                                                       
Query: 75  aaccagctcttggtttaattgcttcattgtattgttttctttgttt-ctgattgattttt 133
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 259 aaccagctcttggtttaattgcttcattgtattgttttctttgttttctgattgattttt 318

                                                                       
Query: 134 gacttgattttgattattttctgtcttctagtcctctttggtgtgcttgttttttttttt 193
           ||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||
Sbjct: 319 gacttgattttgattattttctgacttctagccctctttggtgtgctttttttttttttt 378

                                                                       
Query: 194 tt---------------aataccctaaagctttctactatatttttaacttgctggtatg 238
           ||               ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 379 tttttttttttttttttaataccctaaagctttctactgtatttttaacttgctggtatg 438

                                                                       
Query: 239 agaactttgtaatttatttatggaggcacttagtgctatgaactttcttcttagcactgc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agaactttgtaatttatttatggaggcacttagtgctatgaactttcttcttagcactgc 498

                                                                       
Query: 299 tttcatttgtgtcccataaatactggtgtggtgtgtctgtatgtccattaaattctagga 358
           ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 499 tttcatttgtgtcccataaataccggtgtggtgtgtctttatgtccattaaattctagga 558

                                                                       
Query: 359 agtctttaatttctttgttcatttctttcatgacgcagaaattattggttaaaatgttca 418
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 559 agtctttaatttctttgttcatttctttcatgacccagaaattattggttaaaatgttca 618

                                                                       
Query: 419 atctccatgagtgtgtcggctttctggtgtttctgctgttgttgaaacccagctttaatc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 atctccatgagtgtgtcggctttctggtgtttctgctgttgttgaaacccaactttaatc 678

                                                                       
Query: 479 catggtggtttgataagatacaaggaattattccacatttttttgtatctatttattcag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 catggtggtttgataagatacaaggaattattccacatttttttgtatctatttattcag 738

                                                                       
Query: 539 tttttaattagcctgatcttttctgttttccctctggcttaagacatcttgaaagcatat 598
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cttttaattagcctgatcttttctgttttccctctggcttaagacatcttgaaagcatat 798

                                                                       
Query: 599 tagttcacaaaccaaaagggctaatacatactgtggacaatccagaattctctgttgtta 658
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 799 tatttcacaaaccaaaagggctaatacatactgtggacaatccagaattctctattgtta 858

                                           
Query: 659 aatttatttaacaaacgttgaccacaatgtaa 690
           ||||||||||||||||||||||||||||||||
Sbjct: 859 aatttatttaacaaacgttgaccacaatgtaa 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)