BAC Information

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BAC

Clone NameMSMg01-129L11
Chromosome2 (Build37)
Map Location 25,726,938 - 25,727,168
singlet/doubletsinglet
Overlap genenone
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneKcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-129L11.T7 (MSMg01no129_l11.b1)MSMg01-129L11.TJ (MSMg01no129_l11.g1)
ACCAG337654AG337655
length710708
length of high quality
(start - end)		233 (120 - 352)232 (120 - 351)
definitionCHROMAT_FILE: MSMg01no129_l11.b1 PHD_FILE: MSMg01no129_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:14 2005CHROMAT_FILE: MSMg01no129_l11.g1 PHD_FILE: MSMg01no129_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCATAGCTCTGTGCTGGGCAGGGCAGCCATCAAGTAGCAAGCCAAAGT
GGATCCCAGCTTTGCACGCGTATGGTGCAATCCTTGGGTCTCGAGTCCCA
TGAAGTGCTTGGACAGGATAGTCAGAGATAGATAGCTCCCTGGGAGCAGA
GACAGTTTGGGAGAAAGCATGGTGAGGTTCTGAGCCCAGAAGTTCCCCTA
TCCATCTTCTGTTGCTTTAGATGTGGGCAGAGCCACACCTTTAGGGCCTG
ACCTGTGAGAGGTCCTTCTTGCTTCACCTCTCCACCCACAAGCCCCTTCC
TTTTTTTTTAAACTCCCACCCCCGCGCCACCTGTCACCTCAGGAATTTAT
AGCTGCCTTGCCCCTCAAGAACCTGGCAGACTCAACTCATAGACCTCACC
CTGTCCCACTGTCTACTTGATTCATTTGCCCAGCATGGAAATGGCAGCTT
TTACCTACATCCCCACTCTAGAGCGTACCCTGTTGAGCCTCTCAATAATC
TGTAATGTCTCCCTGAGGTAGTTGTGTCTCTGTTTCATGCATTTTCTATT
CTTGTCCACCACCAGTGTTTTCCTGCCTCCCCGGTTCCCCAATTACTTTG
TGTCGCATCTGCCCCCTTTCCTTGTTTTACCCCTTGTTATTCCCGCCTTG
CCCTCCATCC

CATTACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACCCGCGAAATTCCTGTTCTGAATTCTTCAGTGATGTAGAA
GAAATATAAGATTAACCCCTCCTTCCTCCCCAAGTTGCTTTTGCTCATGG
TGTTTAATCACAGCAGAAATTGTATCTAGAACACATGTTTTAAAGCTTTG
GTTCCTCGTGCTTGCTTAGGACTACTTCATGCACCCACTGAGATCCCTCC
CCTCTTTTTGAGAAAGGTAGCTCAGGTCGGCCTTGAACTCACTATGTAGT
TGAGGATGACCTTGAACTCTTGGTTCTTTTGCCTCCTAAGTCCTGGGGCA
TTTTTTTACATATGCCACCACGCCAGGCTGCATTCATGTAGTACTTCAAG
GAAATACCCTATATTTTAGTCTTCTGACTTGCCACTCTGAGACAAATTTT
GTGCAGATTTGCCTTTGTGGAAAATAAGGTGCACTTGCTCTTGTATCCTA
CCATCCCTGCCTTGTGTTACAGACACGTTATGCACTTCCCTGTCATACTT
TAAATTTATTGCGCTTTGTTACCCGCCTATACAGCCATATTTCCAATCCC
ACAACCTTCCTTTGTCTCACTTGTTTTAGCTTTTACACACCTTCCCCTTT
TCCTTACGGATTAATTGCATTTGTTTACCATGGCTCGATAATTTTCATAC
ATACTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no129_l11.b1 MSMg01no129_l11.b1 CHROMAT_FILE:
MSMg01no129_l11.b1 PHD_FILE: MSMg01no129_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:14 2005
         (233 letters)



>mm_chr2_25726738_25727370
          Length = 633

 Score =  424 bits (219), Expect = e-123
 Identities = 228/231 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatggtgcaatccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatggtgcaatccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagat 260

                                                                       
Query: 61  agatagctccctgggagcagagacagtttgggagaaagcatggtgaggttctgagcccag 120
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 261 agatagctccctgggagcagagacagtctgggagaaagcgtggtgaggttctgagcccag 320

                                                                       
Query: 121 aagttcccctatccatcttctgttgctttagatgtgggcagagccacacctttagggcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttcccctatccatcttctgttgctttagatgtgggcagagccacacctttagggcct 380

                                                              
Query: 181 gacctgtgagaggtccttcttgcttcacctctccacccacaagccccttcc 231
           |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 gacctgtgagaggtccttcttgctccacctctccacccacaagccccttcc 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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