BAC Information

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BAC

Clone NameMSMg01-130A14
Chromosome2 (Build37)
Map Location 146,454,518 - 146,454,849
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc24a3, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneLOC668918, Gm114, Xrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130A14.T7 (MSMg01no130_a14.b1)MSMg01-130A14.TJ (MSMg01no130_a14.g1)
ACCAG337894AG337895
length7141,215
length of high quality
(start - end)
235 (126 - 360)332 (129 - 460)
definitionCHROMAT_FILE: MSMg01no130_a14.b1 PHD_FILE: MSMg01no130_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:39 2005CHROMAT_FILE: MSMg01no130_a14.g1 PHD_FILE: MSMg01no130_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:43:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTTGTCTTACCCAAAAATTAGTTCTTTACAGGGTCTTGGGCCTGTT
TTGCTTAGGCCTGGGTTTGCCCCTCAGCTCTCCTGAGGTTGAGATCTATG
GGTCTAGGCTGTAACTAAACCTTTGACTCTCACAGATCTCTAGATTGCTG
ATTCTCTCTGCTGATGTTGGGATTGCCAGTCACCATAAGTCAATGAGTCA
ATTCTTTAGAACAAATCTCATAAATATAAATATGTATTTATATTTATATG
TGATATATATAGTCAGTCCCTTTGGTGGTTTGAATGAACCTAGCCCCCAT
AGGCTCATATAGTGCTTCTCTTCCCCCCCCCCCGTAGNCTTGTTAGAATA
GGTATGGCCTTTTCCCCCACACATGACAATAAAAACAGGCTTTGAGGTTT
TTGATCCTCAAGCCAAGCTAAGTGGCTCACTATCTCTTCCTGCTGCCTGC
TTGCTATATTTAGGCAAAACTTTAACATGGACTTTATACAGATGAGCAGA
GCTCTTTCTCATACCTTCTTCATCTTTAGCATCCTGCCCCTACTATTACA
GCCAACCAGACCCAAACTTTGATCTATGACTCCTCACTTCAGTGTACCAT
AGCGTGTTTGATCTCCACCTCTCCATACTGCAATTTTAAAAGATTTTTTA
CGTAGACAGGCAGG
NCCATCCCTTTTTTNAACCAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATTTAAGGTCTGGGTAANTCTA
GAATAAATAGTTTGGCTCCTTGAGGAAGTCAGCGGGTGGATCCCGATGAA
TAGAGCCCTCAGTGTCTCTGGTGCACAACTGGTCTTCTTTTGTTTATGAG
TCTTTAGCTCTCTGTTATATAAACATCTGGAGGGCTGAGTATCATTTCTG
CACTAGTCAAGGAAGAATGCATCTTATATTCTCCCACAAAAAGGCAAACT
GGTGTGTGGGCTGCACCAGCGAAGGAACTGGAAAATCTGTGTGGTGTGGC
CTTGAAGGAGTCACTCTGGGCCTGTGAATCACTTTTCTTTCCTCCCCCAA
CATCTGTGTTTCAATGAAATAGTATGTGTGAAGAAGACTCGAGATTCCTT
TCCGGGTAGAACTGACTGCGTTTGTTTGACATCAGCAGCAGCCATAAACA
GGGCAGCGTATCAAATGGAAATGAAACTGTAGTCATAGCTTTCAAACATT
ATTTTTTTCCACTGAAGTAGTGAGCAGTCTGCCAATCACAAAACTGCTTA
ATTCAATATCTGGAGTATTTTTCCATTGTGGTTACCTGTGTGTGTACCTT
CTGGGGCTCTAGGATGAATAAAAAACAAACCAAAACAAAAACAGTTAACA
TCACCATCTGATCAGTGTTTTGTCCTGAAGATGAAGTGAAGGACTTGATT
GTTTTTGACCATACTGGTCATGGATAGCTTCACTATTGAAAATGTGGTTC
ACCGACCAGTGTCATAGACATGACATCATCCATGACCTTGTTGGAAAGGC
AGACTCAGGTTATCCCCACTCCTACAACCTTGAATCAGAATCTGCCTATT
AACAAAATCCCTAATGCCTTCCTTATGCTGTTGAACCGTATATACACCAA
ACTTTGATGCTTTGTTAAAATATCCTTTACTTAAACCCCAGTTCCCCGAA
GCACTTTTTTTGAAAATTCTCCGGGTTGCCTGGGTACCCTTTTTAGTTTT
TGAGGGAAAGAGAAAAAATCCTGGTTTTTTCCCAAAACTTTTTTTGTTTT
AAAAAAAAAGGGATGGGGGGTTAAAAAACACCACCCNATAAACCCTGGGG
TTTTTTATAAAAACCTCTGGGGAAGTGTTTGTTTAAAACCAAAACCACGC
GATGTGTATTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_a14.g1 MSMg01no130_a14.g1 CHROMAT_FILE:
MSMg01no130_a14.g1 PHD_FILE: MSMg01no130_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:39 2005
         (332 letters)



>mm_chr2_146454318_146455049
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcgggtggatcccgatgaatagagccctcagtgtctctggtgcacaactggtcttct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcgggtggatctcgatgaatagagccctcagtgtctctggtgcacaactggtcttct 260

                                                                       
Query: 61  tttgtttatgagtctttagctctctgttatataaacatctggagggctgagtatcatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtttatgagtctttagctctctgttatataaacatctggagggctgagtatcatttc 320

                                                                       
Query: 121 tgcactagtcaaggaagaatgcatcttatattctcccacaaaaaggcaaactggtgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcactagtcaaggaagaatgcatcttatattctcccacaaaaaggcaaactggtgtgtg 380

                                                                       
Query: 181 ggctgcaccagcgaaggaactggaaaatctgtgtggtgtggccttgaaggagtcactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctgcaccagcgaaggaactggaaaatctgtgtggtgtggccttgaaggagtcactctg 440

                                                                       
Query: 241 ggcctgtgaatcacttttctttcctcccccaacatctgtgtttcaatgaaatagtatgtg 300
           ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||
Sbjct: 441 ggcctgtgaatcacttttctttcctcccccaacatctgtgaagcaatgaaatagtatgtg 500

                                           
Query: 301 tgaagaagactcgagattcctttccgggtaga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 501 tgaagaagactcgagattcctttccgggtaga 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)