Query= MSMg01no130_a23.b1 MSMg01no130_a23.b1 CHROMAT_FILE:
MSMg01no130_a23.b1 PHD_FILE: MSMg01no130_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:41 2005
(648 letters)
>mm_chr2_87608117_87609164
Length = 1048
Score = 1176 bits (608), Expect = 0.0
Identities = 635/646 (98%), Gaps = 4/646 (0%)
Strand = Plus / Plus
Query: 3 gaattcaagttactttgccgagctattatagtaaaaacagcatgatagtggcataagaca 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcaagttactttgcagagctattatagtaaaaacagcatgatagtggcataagaca 262
Query: 63 gatgcaatgatcaatgcaagaaaattgagaaccaggctgtaagttgacaaacctaaggcc 122
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 263 gatgcaatgatcaatggaagaaaattgagaaacaggctgtaagttgacaaacctaaggcc 322
Query: 123 atctgaatgttcacaaagaatccaaaaatactggaaaaaaagcagcacctacaacaaaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atctgaatgttcacaaagaatccaaaaatactggaaaaaaagcagcacctacaacaaaat 382
Query: 183 ggtgtgagctaaacagagtctgcatgtaaagaattgaagctggattcttgtctctcatcc 242
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtatgagctaaacagagtctgcatgtaaagaattgaagctggattcttgtctctcatcc 442
Query: 243 ttcacaaaactcaacaacaaatgtatcaaggaccttgatgtaagatttgatacccttgac 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcacaaaactcaacaacaaatgtatcaaggaccttgatgtaagatttgatacccttgac 502
Query: 303 cagctagaggagaaattagggaatagccttgaatttacaggactctcttcagagtcctga 362
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cagctagaggagaaagtagggaatagccttgaatttacaggactctcttcagagtcctgg 562
Query: 363 taacacagacactaagacaaacaactgacacataggacaattgaactagaatgactctgt 422
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 563 taacacagacactaagacaaacaactgacacataggacaatttaactagaatgactctgt 622
Query: 423 attgcaaaagtgccataattcatatatagaagttgcctgaggaaaaatcttttatcatct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attgcaaaagtgccataattcatatatagaagttgcctgaggaaaaatcttttatcatct 682
Query: 483 atataaatatgcttgacaagtattgtcaaaatatacacaaaactaaacaagtaaacatta 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atataaatatgcttgacaagtattgtcaaaatatacacaaaactaaacaagtaaacatta 742
Query: 543 aggaagtatagggatatatatttcaacctacttaaataatcattcaaacttccctctagc 602
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 743 aggaagtatagggatatatatttcaacctacttaa----tcattcaaacttccctctagc 798
Query: 603 cccccaccaaccagacatagtgggaaaaaatgttattaggatacag 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 cccccaccaaccagacatagtgggaaaaaatgttattaggatacag 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no130_a23.g1 MSMg01no130_a23.g1 CHROMAT_FILE:
MSMg01no130_a23.g1 PHD_FILE: MSMg01no130_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:43:41 2005
(239 letters)
>mm_chr2_87744260_87744899
Length = 640
Score = 377 bits (195), Expect = e-109
Identities = 229/243 (94%), Gaps = 7/243 (2%)
Strand = Plus / Minus
Query: 1 aacaccaataaacaaatgaaggaacagaaaaaatgacagatttagataacaattggtgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 aacaccaataaacaaatgaaggaacagaaaaaatgacagatttagatagcaattggtgtg 381
Query: 61 aatttaatttgtagaacacattgatttctccttattttaacttagcgatatcattactta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatttaatttgtagaacacattgatttctccttattttaacttagcgatatcattactta 321
Query: 121 t--aaaaaaaagcatttaataaacctgcaggagagatcataaca--aaaataaaatcagt 176
| |||||||| | ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 320 tttaaaaaaaa---tgtaataaacctgcaatagagatcataacataaaaataaaatcagt 264
Query: 177 gaaattgtgacatttagtatgtggaactttaaataattatatacagattaactggtttca 236
|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 263 aaaattgtgacatttagtatgtgaaactttaaataattatatacagattaattggtttca 204
Query: 237 ttc 239
|||
Sbjct: 203 ttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
