BAC Information

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BAC

Clone NameMSMg01-130M17
Chromosome2 (Build37)
Map Location 34,982,996 - 34,983,336
singlet/doubletsinglet
Overlap genenone
Upstream genePbx3, LOC665948, Mapkap1, LOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371
Downstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130M17.T7 (MSMg01no130_m17.b1)MSMg01-130M17.TJ (MSMg01no130_m17.g1)
ACCAG338458AG338459
length714707
length of high quality
(start - end)
341 (73 - 413)44 (67 - 110)
definitionCHROMAT_FILE: MSMg01no130_m17.b1 PHD_FILE: MSMg01no130_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:46 2005CHROMAT_FILE: MSMg01no130_m17.g1 PHD_FILE: MSMg01no130_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTAAATTTGCGGCCGTAAACGACTCCTATATTCAGAGAATGGGCGGAAT
TCCCCCAGTTTTCCTGTTCCATTGCAGAACAAAGCTATGTCTTACTTATG
ATGGCTTCTATCTCTATTAAGCTCTGTTCTATAAAACCCTAATTAATCTT
TTTTGTATAATTCATAACATCAGAAGGACTGTGCCTGATCTCTCTTACCA
CTGTTTTAAGATACTAGGACTATATTGTATGTGTGCACACATTACCTTTT
GTAGTGCTGGACACTGAAAAAGAGCCTTGCACATGCTAGGCAACTGTTCC
ACCATGCAGTCATAGCCTGTTTTTTCTTTTCTAAGAACTTAAGAGTACCT
CTGTTTACCTGCACTTATTTTTTTTTCCGTATCTTCCAACTGTAGATCAG
GTGGTGCTTGGACTCTCGGGGGTGTGTGCTCGTGTCTAAGCTGTCCGCCT
TCTGGCACCATCTTCCTGATCTGAACTGCCTGGGCGTCGCTGACAATGTA
TGTCTCCGTGGCAAACATATTTCTCTTGTATCTGGATTTGCCAATGCAAG
GGCTTTCATCTGGGTATTTGCCAACTTCAGCATACTAAAGCAAGCATATT
AATAAGATTTATGGATTAAGAAGCAACTTCCAGTCAAATGACATTATTTA
CCTTATTAATGGCACACTTATCACAGAATACTTACATTTATATTAACCTA
ATATGCCTAGAGGC
CATGCTGTGGGTAGGCTGGCGGCGCCTGGCTTCGACTTTACGTGACCTAT
CGAAGGATTCCCGGATTCTGTGCCCGCATCTACATAAAAAGCCACCTACA
AGCCCCTTCTATACACCACACACCGCACACACACATACACTCTCTACTCA
CACGAGGGATAGGTAGAGAGAGAGAGAGAGTGGGGGAGAGGTAGTACTTG
TTTTGACCCATCCTTCTTACCTGCGACCTTCTTCTTTTTGGTCCTTTTTT
GTACATCTATTGGTCCTGTTCCCGTCCTATCTCTGCACTGTCCTCTCTCA
TCCTCCTTTTTTTTTTTTTCTCCTTCTCCTTTTGCTCTGAAGAATTTAGT
TACTTCCGGGTCGGGCCCCAAGTATAGGATGGANGTTTACAGTTTTGCTC
CCCCATAAACGTATTAAACATTTGTGGTGGGGGGGGGTCCTCCTTTCTGT
CTTTTCTCCACTTCTGTGTATCGTCGTTTTTCTCTCTTTCTCCCCTTTTC
ACCCATTTTCCCTCTTCTTTTTTTTTTTTTTTTTTTTCACCTTTCTTTCT
TTCTTTTCTTTCCCCCTTTTTCCTTCTTTCTTTCCTTTTACCCTTTCCCC
CTTTTCCTTTCTTTCCCCTCCCTCCCCCTCGCCCCCTACTTTCTTTTTTT
TTTCTTTTCCCCTACTTTTCCCCCTTATTCTTCACCCCTCCCTTCTTCCC
CTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_m17.b1 MSMg01no130_m17.b1 CHROMAT_FILE:
MSMg01no130_m17.b1 PHD_FILE: MSMg01no130_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:46 2005
         (341 letters)



>mm_chr2_34982963_34983703
          Length = 741

 Score =  621 bits (321), Expect = 0.0
 Identities = 336/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcagaacaaagctatgtcttacttatgatggcttctatctctattaagctctgttctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 374 tgcagaacaaagctatgtcttacttatgatggcttctatctctattaagctctgtactat 315

                                                                       
Query: 61  aaaaccctaattaatcttttttgtataattcataacatcagaaggactgtgcctgatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 aaaaccctaattaatcttttttgtataattcataacatcagaaggactgtgcctgatctc 255

                                                                       
Query: 121 tcttaccactgttttaagatactaggactatattgtatgtgtgcacacattaccttttgt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 254 tcttaccactgttttaagatactaggactatattgtatgtgtgcacgcattaccttttgt 195

                                                                       
Query: 181 agtgctggacactgaaaaagagccttgcacatgctaggcaactgttccaccatgcagtca 240
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 194 agtgctggacactgaaaaagaaccttgcacatgctaggcaaatgttccaccatgcagtca 135

                                                                       
Query: 241 tagcctgttttttcttttctaagaacttaagagtacctctgtttacctgcacttattttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tagcctgtcttttcttttctaagaacttaagagtacctctgtttacctgcacttattttt 75

                                                    
Query: 301 ttttccgtatcttccaactgtagatcaggtggtgcttggac 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  ttttccgtatcttccaactgtagatcaggtggtgcttggac 34


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)