BAC Information

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BAC

Clone NameMSMg01-130P02
Chromosome2 (Build37)
Map Location 15,902,086 - 15,902,500
singlet/doubletsinglet
Overlap genenone
Upstream geneCacnb2, LOC100041220, Nsun6, Arl5b, LOC633061, LOC667329, LOC227588, LOC625457
Downstream genePlxdc2, 4930515L03Rik, LOC383665
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130P02.T7 (MSMg01no130_p02.b1)MSMg01-130P02.TJ (MSMg01no130_p02.g1)
ACCAG338571AG338572
length716726
length of high quality
(start - end)
314 (41 - 354)474 (71 - 544)
definitionCHROMAT_FILE: MSMg01no130_p02.b1 PHD_FILE: MSMg01no130_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:59 2005CHROMAT_FILE: MSMg01no130_p02.g1 PHD_FILE: MSMg01no130_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAAT
GCTTTTTCTGCATCTACCGAGATGATCATGTGGTTTTTGTCTTTGAGTTT
GTTTATATAATGGATTACATTGATGGATTTTCGTACATTAAACCATCCCT
GCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTTCTTTAATG
TGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTTGCATCGAT
ATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGATCTTTCT
GTGTTTTATTTTATCACACCACCACGTGGCTTCATAAAATGAGTTGGGTA
GAGTACCTTCTACTTCTATCAAGAGAAATAGTTTGTGCAGAACTGGAATT
AGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGCCC
TGGGCTTTTTTTGGTTGGTAGACTATTAATAACTGCTTCTATTTCTTTAG
GGGATATGGGACTGTTTAGAATGTCAACTTGATCCTGATTCTACTTTGGT
ACCTGGCATCTGTCCAGAAATTTGCCCATTTCGTCCAGGTTTTCTAGTTT
TGTTGAGCATAAGCTTTTGCAGACGGACCCGATGGTGCTCCCGTTTTCCT
TCAGGATCTGCTGTTA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATAAGTTTTGTTTATGATCCATTTTATAA
GAAGCTGGAATATAAATAACAATATTAAAGTTGTCTTTTGATTCTACATT
ACCTTGTAGAAAAATTTGCTTTTACATTAATTTGTTCAAAAAGACCCATG
CTTTATGGCACAGGCTTGAACAAACTATATAATAGAACCATTATTCCTCT
AAATGAATTTTGCAAGATGAAAGTGTATAAATTTATTTATAATTATTTTT
GACCTTATATAACATATATATATAAAAAACTCCTTATAGGAGTTTTATAA
AGAATATCTGTAGCTAGACTTCACATTTAGACATGTCAGAAAAGATTGCA
GTATTCTTTCACACCGCTATCTGAATGAAGCTCTAATGTTCGAATGACAC
TTTCTCACAAGGATAGTTTCCAATTCAAGATCTGTTTAATGTGGACTTAA
ATTTATTTCTCATTCATGTATGCTTTAGGATCCACTTTCAATCTCATTGG
GCCTCATTTTTGTAATTTATGTCTAAAGATGTATACGCAAATCTCAGATC
TGGTATTTTATATAATGTCGAAAATGAATTTAACAAAGACCACCTCTGCA
TGTTACAAGAGCTATGCTATGTAAAGCGGACCCACTTTCGCCCCTTGACA
TCCACAAAGTATTGTTACTTTCACCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_p02.g1 MSMg01no130_p02.g1 CHROMAT_FILE:
MSMg01no130_p02.g1 PHD_FILE: MSMg01no130_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:59 2005
         (474 letters)



>mm_chr2_15901627_15902500
          Length = 874

 Score =  764 bits (395), Expect = 0.0
 Identities = 411/417 (98%), Gaps = 2/417 (0%)
 Strand = Plus / Minus

                                                                       
Query: 58  aagttgtcttttgattctacattaccttgtagaaaaatttgcttttacattaatttgttc 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 aagttgtcttttgattctacattaccttgtagaaaaatttgcttttacattaatttgttc 815

                                                                       
Query: 118 aaaaagacccatgctttatggcacaggcttgaacaaactatataatagaaccattattcc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aaaaagacccatgctttatggcacaggcttgaacaaactatataatagaaccattattcc 755

                                                                       
Query: 178 tctaaatgaattttgcaagatgaaagtgtataaatttatttataattatttttgacctta 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 754 tctaaatgaattttgcaagatgaaagtgtataaatttatttataattatttttgatctta 695

                                                                       
Query: 238 tataacatatatatataaaaaactccttataggagttttataaagaatatctgtagctag 297
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 tataacatatatatat--ataactccttataggagttttataaagaatatctgtagctag 637

                                                                       
Query: 298 acttcacatttagacatgtcagaaaagattgcagtattctttcacaccgctatctgaatg 357
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 636 acttcacatttagacatgtcagaaaagattgcagtattctttcacactgttatctgaatg 577

                                                                       
Query: 358 aagctctaatgttcgaatgacactttctcacaaggatagtttccaattcaagatctgttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 aagctctaatgttcgaatgacactttctcacaaggatagtttccaattcaagatctgttt 517

                                                                    
Query: 418 aatgtggacttaaatttatttctcattcatgtatgctttaggatccactttcaatct 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aatgtggacttaaatttatttctcattcatgtatgctttaggatccactttcaatct 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)