Query= MSMg01no131_d20.b1 MSMg01no131_d20.b1 CHROMAT_FILE:
MSMg01no131_d20.b1 PHD_FILE: MSMg01no131_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:23 2005
(517 letters)
>mm_chr2_52673354_52674270
Length = 917
Score = 841 bits (435), Expect = 0.0
Identities = 459/467 (98%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 51 taacatcactaaggctaaaagaagctttgtagagtgttctcaatcatataaagccttggg 110
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 917 taacatcactaaggctaaaagaagctttgtcgagtgttctcaatcatataaagccttggg 858
Query: 111 aaaacaagacttctcaaacaattggcgttaaaaccaatttacaatcacacgacaacataa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaaacaagacttctcaaacaattggcgttaaaaccaatttacaatcacacgacaacataa 798
Query: 171 tgtcgttatctaggagaatgggagaataaagagaattgagaaatagacagaggttgccag 230
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 797 tgtcgttatctaggagaatgagagaataaagagaattgagaaatagacagaggttgccag 738
Query: 231 gcagctaagaactctttctttgctatcttctggacacaatatgagctccaagcaactaaa 290
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gcagctaagaactctttcagtgctatcttctggacacaatatgagctccaagcaactaaa 678
Query: 291 ataccatgtacaagatggagccaggtagtaagtccagcctggatgaggaaggatcctatg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ataccatgtacaagatggagccaggtagtaagtccagcctggatgaggaaggatcctatg 618
Query: 351 aggctctagttatagctaatgagcttttgcaattggtagctgcaggaatgagttattctt 410
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 617 aggctctagttatagctaatgagcttgtgcaattggtagctgcaggaatgagttattctt 558
Query: 411 caggggtgtggccatcagtatgttgcatactctaatgtgggtagtactaagcggacatgg 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caggggtgtggccatcagtatgttgcatactctaatgtgggtagtactaagcggacatgg 498
Query: 471 tgagttataagctaaaaaaagacatgaaggttggagagatggcgggg 517
|| ||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 497 tgggttataagctaaaaaaagacatgaaggttggagaggtgg-gggg 452
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space: 459849
Effective search space used: 459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no131_d20.g1 MSMg01no131_d20.g1 CHROMAT_FILE:
MSMg01no131_d20.g1 PHD_FILE: MSMg01no131_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:23 2005
(614 letters)
>mm_chr2_52519580_52520593
Length = 1014
Score = 1187 bits (614), Expect = 0.0
Identities = 614/614 (100%)
Strand = Plus / Plus
Query: 1 attcctttctcttcttggttgtgggcatgcagtttatcttgacaccacaggttcccacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctttctcttcttggttgtgggcatgcagtttatcttgacaccacaggttcccacca 260
Query: 61 tgatatggcgcttcaccattggcctcaaagcaacagatccaagtggccatggtctgtaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatggcgcttcaccattggcctcaaagcaacagatccaagtggccatggtctgtaac 320
Query: 121 ttctgaaaccacaggccaacgtaagtcttttctcttttgttgatgcataggatcaaacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctgaaaccacaggccaacgtaagtcttttctcttttgttgatgcataggatcaaacct 380
Query: 181 aggaccttgcacatgctagggaaggtccactgagctatgcatccccccagacctgtctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaccttgcacatgctagggaaggtccactgagctatgcatccccccagacctgtctct 440
Query: 241 ccttagaaattcattatctctggtattagtttcagggacaggaagccaacccagatccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttagaaattcattatctctggtattagtttcagggacaggaagccaacccagatccta 500
Query: 301 tctccctgcaagattccctgactcaccctcatagttaaagccttgtggactggactcttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctccctgcaagattccctgactcaccctcatagttaaagccttgtggactggactcttg 560
Query: 361 atgagcttttgtgagaacttctagtcttcaagaatgaagagcattagaaagtagccaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgagcttttgtgagaacttctagtcttcaagaatgaagagcattagaaagtagccaagg 620
Query: 421 agctaaagggatctgcaaccctataggcggaacaacattatgaactaaccagtaccccgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctaaagggatctgcaaccctataggcggaacaacattatgaactaaccagtaccccgg 680
Query: 481 agctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactggaaag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactggaaag 740
Query: 541 agaggcccattggacacgcaaactttatatgccccagtacaggggaacgccagggccaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaggcccattggacacgcaaactttatatgccccagtacaggggaacgccagggccaaa 800
Query: 601 aagggggagtgggt 614
||||||||||||||
Sbjct: 801 aagggggagtgggt 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
