BAC Information

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BAC

Clone NameMSMg01-131N21
Chromosome2 (Build37)
Map Location 102,678,534 - 102,678,765
singlet/doubletsinglet
Overlap geneCd44
Upstream geneLOC100043302, Commd9, Ldlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2
Downstream genePdhx, Apip, Ehf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131N21.T7 (MSMg01no131_n21.b1)MSMg01-131N21.TJ (MSMg01no131_n21.g1)
ACCAG339257AG339258
length721730
length of high quality
(start - end)
232 (127 - 358)291 (76 - 366)
definitionCHROMAT_FILE: MSMg01no131_n21.b1 PHD_FILE: MSMg01no131_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:13 2005CHROMAT_FILE: MSMg01no131_n21.g1 PHD_FILE: MSMg01no131_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCAATCTATXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAGAGGACCG
CGGAATTCCATGTTTCCTTAAAAATCAGTGGGAAATGTCTCCGTGTTTCC
ATCTGCAATATAGAATCTTATGCCAATTTCTTTGCAGTGCATGGCAACTT
ATAAATGAATCACTAGTAGAACAGCGGGTGTGGTGACTAGCTCCCTGGTG
TGTTTAATTCTAAGGGATTCTATTGTAATCTTTCTTTCTATACTTCTACA
GTGGCACAGAATGGAACAAAGGCATAAACCATGTGCCCACATGCCATTTG
TCATTGTTAGAAGACAATGCTTCTAATGGATTCCATCTGTGCTTTTGTGA
TGAGTACCATTTTCTTGCTCCTCACTGGGGAAGCTATTACCTTAAGTCGT
CTGTATATCACCGCCCGCTCATTGAGACTTTCGCTGTGGGATGTGCTTGT
CTCGGAGTGACATCATGCACTTGAGTTCTTACACCTCCTTCTTTAGGAGA
CTGTGGCAGCATGTTTCGAGAATTACTTCATCTTCCCTTGATGCCTATAA
CTTATCCTCTATCCATCACAGCACTTGTTAATGCTATGCTATGTTGTGAC
CAAGAAAACAAGCACAAATGAAGTGAAACCTGGGAACCATCCTAAACTGA
TGCAGCTCCTGGTCCTCAGAATTATCTAGCTGTTCCCATTACCATCTTTA
GAGATCTAGTCTTTTTTAAAA
NCCCCTCGATGACAGTGGGAGGCCTGGCGGCCGCCTGTTCACAAATTGAG
GTGAACTATAGAAGTTCCAGCAAAATTCCCCTGTGCTGGGGCATATACAG
TTTGCAAGTCCAATGGGCCTCTCTTCCCAGGGATGGCCGACTAGGCCATC
TTTTGATATATATGCAGCTAGAGTCAAGAGCTCCAGGGTACTGGTTAGTT
CATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGCT
ACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCTGA
CTGTGAGCATCCACTTCTGTGCATAATACCAGTTTTATTCACACACATTT
TTTTCTTTTCTTTTATGGAAAGCCAAAAGCCTAAGCATGAAGGGATAATT
AAAGATTTTATTTCTGATTTATCAAAACCCTTTTTAATTTTAATTTTTGT
ATTTCGTGTCTGTGCACTGGGAGCAATGCACATGCAGGAACCTGTGGAGG
TCGGAAGAAGGTGTCAGATAGCCTGGAAAGGGGGTGGCAGAGACAGGTAT
GAGCTGCCAAGTGGGTGCTAATAATCTAACCAAGAGCCTCTTCAAGGGCC
ATCTCTTCCAATCAGAGTCAGGTTCCTTAAGCTGAAGGGAACACAGAGCT
GGTCAACGTATTTGGTTGACTAGACCAACTAACTAACAAATATACTATCA
GACGGACAAACAAAAAACAAAAAACCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_n21.b1 MSMg01no131_n21.b1 CHROMAT_FILE:
MSMg01no131_n21.b1 PHD_FILE: MSMg01no131_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:13 2005
         (232 letters)



>mm_chr2_102678334_102678965
          Length = 632

 Score =  449 bits (232), Expect = e-131
 Identities = 232/232 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctttgcagtgcatggcaacttataaatgaatcactagtagaacagcgggtgtggtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttctttgcagtgcatggcaacttataaatgaatcactagtagaacagcgggtgtggtga 373

                                                                       
Query: 61  ctagctccctggtgtgtttaattctaagggattctattgtaatctttctttctatacttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctagctccctggtgtgtttaattctaagggattctattgtaatctttctttctatacttc 313

                                                                       
Query: 121 tacagtggcacagaatggaacaaaggcataaaccatgtgcccacatgccatttgtcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tacagtggcacagaatggaacaaaggcataaaccatgtgcccacatgccatttgtcattg 253

                                                               
Query: 181 ttagaagacaatgcttctaatggattccatctgtgcttttgtgatgagtacc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttagaagacaatgcttctaatggattccatctgtgcttttgtgatgagtacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)