BAC Information

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BAC

Clone NameMSMg01-131O09
Chromosome2 (Build37)
Map Location 108,431,745 - 108,432,104
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131O09.T7 (MSMg01no131_o09.b1)MSMg01-131O09.TJ (MSMg01no131_o09.g1)
ACCAG339281AG339282
length702786
length of high quality
(start - end)
364 (317 - 680)---
definitionCHROMAT_FILE: MSMg01no131_o09.b1 PHD_FILE: MSMg01no131_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:16 2005CHROMAT_FILE: MSMg01no131_o09.g1 PHD_FILE: MSMg01no131_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCATXXXXXXXXXXXXXXXXXXXXXXXCTTTCAAGAGAGGACCGCGG
AATTCACTGTCTCATGAACTGAGATCACATTGCCTCTGAGAAAACATTTC
AGCCTCCTCCTTTTATACCCCACTTAAGTCAGAGTTACGAAAAGAAAACT
AATATTTCTTACCACACAAAATGACTTACATATATGTTTTTCATTAGAAT
ATTTTGATTTAAATATTTTATAGGATACATAAGATTTTTGATACCAGCTT
TATTCTATTGCTGGTAGCAGTGGAGAAAACCAAATTGTAGAAGATTTATA
AGAAATATGTATCAAAATAAAGGATCCTTAATATTTAGGGGTTTATGTGT
GTTGTCATTAGATGCTAAGAGTCTACAAAAAAACATCAGCAGTAGGATTA
TATAGAAATAAATGTCTCAAAATCAGTGGTCAACAGCTTGCCATCACTCC
TTGTATTATTGTCATAAACAGGGGGTGTTGAAGGTAAAATTCAGATCATT
TTGTTATTAATTACATGAGATTTTTTCAAAATTAAGACTTTTTATCTGGG
CAAGAAAACTTTAGTTCCTGAATTTCAACTAACAGTAAAGCTAAATAAAG
GAGAGAAATCTTTGTTTTCATTATTTACCCTTGGTCAACTAAAGGTCTAG
ATTCCTGAAGATAAAATTCTAATATGATCAATGGAAGAGACATTTAAGAA
GA
TCAATACAGNTGNTAGGCCTGNCGGCCGCCTGTCCGTCAAATTTAGGTGA
ACTATAGATGGCTCAGAGGCATTCATACTCTCCCACCTATTTTGAGCTTT
CGTTTCANTGNTGTATTACCTACTAATGACTGAATATTAACTGTGTTGTC
ACATAATCNTGATTGACTTGAAAAGAGACAAAAAGAAGTCACCAAGATGC
ATCAAAGCAGTTNTAGAAATGTCATCAANTAAAGCCATCTTCACCATTTT
AAAAAANGAAAAGAGTTGGTTGAGAAAAATAAATTCTTACAGGCCCTTGA
ACTAANNAAAAGTGTTGAATTTTTTTAAATCTTAAAAACCCAATAAAAAA
AAAAAAGGGTTTTTTTTTATTAACAAAACTTTCTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAATTTCAACAAAAAAAAAAAAAATTTTTAAA
AAAGGAAAAATTTTTTTTTTTGGAATATATTTTNNNNTCCCATTTTTTTT
TAAAATTTGCCCAAATAAGTAAAACCCCCAAAATTTTTAAAAAAAATTTT
TTTTGTTTGAAACTTTNAATATTTTAAAAAAATGGGGTGAGAATTCCTCT
CTTTTTTTCTTTTTTTTTNTTTTTTTTCTCACACCCCATATATAAAAAAA
AATTTTTTCCTTCTTTATTTTTTTATTTATATATAACAAAAAATTTTTTA
AAAAAAAAAACAATAATTTACTTTTTTTTTTTTTTTTAAAAAAAAAAAAA
AATATTTTTTTTTTTTTTTTATACATTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_o09.b1 MSMg01no131_o09.b1 CHROMAT_FILE:
MSMg01no131_o09.b1 PHD_FILE: MSMg01no131_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:16 2005
         (364 letters)



>mm_chr2_108431545_108432304
          Length = 760

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/364 (98%), Gaps = 4/364 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaggatccttaatatttaggggtttatgtgtgttgtcattagatgctaagagtctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaggatccttaatatttaggggtttatgtgtgttgtcattagatgctaagagtctac 260

                                                                       
Query: 61  aaaaaaacatcagcagtaggattatatagaaataaatgtctcaaaatcagtggtcaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaacatcagcagtaggattatatagaaataaatgtctcaaaatcagtggtcaacag 320

                                                                       
Query: 121 cttgccatcactccttgtattattgtcataaacagggggtgttgaaggtaaaattcagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgccatcactccttgtattattgtcataaacagggggtgttgaaggtaaaattcagat 380

                                                                       
Query: 181 cattttgttattaattacatgagattttttcaaaattaagactttttatctgggcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattttgttattaattacatgagattttttcaaaattaagactttttatctgggcaagaa 440

                                                                       
Query: 241 aactttagttcctgaatttcaactaacagtaaagctaaataaaggagagaaatctttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 aactttagttcctgaatttcaactaacagtaaagctaaataaaggagagaagtctttgtt 500

                                                                       
Query: 301 ttcattatttacccttggtcaactaaaggtctagattcctgaagataaaattctaatatg 360
           |||||||    |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcatta----cccttggtcaactaaaggtctagattcctgaagataaaattctaatatg 556

               
Query: 361 atca 364
           ||||
Sbjct: 557 atca 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 760
Length adjustment: 9
Effective length of query: 355
Effective length of database: 751
Effective search space:   266605
Effective search space used:   266605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)