BAC Information

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BAC

Clone NameMSMg01-132E16
Chromosome2 (Build37)
Map Location 37,314,469 - 37,314,935
singlet/doubletsinglet
Overlap geneRabgap1
Upstream geneOlfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132E16.T7 (MSMg01no132_e16.b1)MSMg01-132E16.TJ (MSMg01no132_e16.g1)
ACCAG339574AG339575
length733710
length of high quality
(start - end)		694 (40 - 733)642 (69 - 710)
definitionCHROMAT_FILE: MSMg01no132_e16.b1 PHD_FILE: MSMg01no132_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:46 2005CHROMAT_FILE: MSMg01no132_e16.g1 PHD_FILE: MSMg01no132_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTTGGACTTCGACACTCATCACTTCCTTCTTACTCGCCACCATTTTTTGT
TGCTCAGTAAGTACTATGTTGTTCAATAAGCACCTAGGTGTTCTGCTCTT
TTCCGAGCTGTATCTCACTCCTTGGTATCCCTATCTCCATTCTTTATGTA
TTCCAGTTCAGGAACTACAACAGAAAGTAACAAGACAAGACTCAAAAGAT
ACCATAGCAGGCCAATTCCCACATGATTTGTATCTTTTAAAGTAAAATAA
GTACTGGGAGATGGGTCAGCAGCAAAAGTCACTATTGCCATGACAATTAC
AAGGATCTGAATTCAGATCCTTATGACCCATTTTAAAGAACAGAAGCCAG
GCAATGTGGCATGTGCCCACAACCCCAACACCAGGGTGTGGATGAAGAAT
ACTGAAGCTCACTGACCAGGTAACTTAACTGATGAGCTTCAGATTCAGCA
AGAGAACCTACCTTAAAACATGAATGCAAGAAAGCAAATGAGGACAACCC
CCAATGTCCACCTCCAGCTTCCATAGGCACATGTGCACCTCATACCCCCC
AAAACCAGTAAGGGCTTATGGCGGGGCTCAGTTACAGAGCACTGGCTTAG
GTAGTGTGAGGCTTTGGGTTTGATCCTGAACACTAAAACTAAATAAGCAG
ACTAATAAGGGAACACATACATTGATTGCTCTC

AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACTCTC
TCAAAAAACAAAAGAGCAAAAATCTCCAAGCCCACTCCCAAGTGACATAC
TTCCTCCAGCAAAGCCAAATCTCCAAATCTTCCCAAACAGCTCCACCAAC
TGGGGACCAAGTGGCCAAAAGCTTGAGACTTTGAGGATCATTTCTCATTC
AAAACCCTACAGACCTCATGGGGCTGTACCATGTGCTGCTAATCTGAGGG
CAACAGAAAGAGTCCAGTAGAGGGGAAGACATGTTGTATATCTGGTTGTC
TATTGGTGAGCCCACCAGGCTCCGATAGTTAGTTCCAAATTCAGGTACAG
ACAGGTGCTCCCAATTAAGATCTATGTGACACTAAACAAAACCAAAATTA
ATTAATAAGGCAAAGAGATTTATATATGGGATGTACTTTTACAGGGTGGA
AAGGAAATGGGAGGAGAGGAACAGAATTTATAATACACAGATATGAAAGA
ATAAAATGATGGCCATATGCCTATTGGAGGGTTGAAATGTTATAGTTTGA
ATGTAAAAATGGCCCCCACAGGCTCGTGTCTGAATACATGGTTCCCAGCT
GGTAGCACTATTTTGAGAAGTTGAGGGACCTTATGACATAGGATTACCTG
GTAGATGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_e16.b1 MSMg01no132_e16.b1 CHROMAT_FILE:
MSMg01no132_e16.b1 PHD_FILE: MSMg01no132_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:46 2005
         (694 letters)



>mm_chr2_37314469_37315563
          Length = 1095

 Score =  864 bits (447), Expect = 0.0
 Identities = 462/467 (98%), Gaps = 1/467 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttttgga-cttcgacactcatcacttccttcttactcgccaccattttttgtt 62
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ggaattcttttggaccatagacactcatcacttccttcttactcgccaccattttttgtt 408

                                                                       
Query: 63  gctcagtaagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgt 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gctcagtaagtactatgttgttcaataagcacctaggtgttctgctcttttccgagctgt 348

                                                                       
Query: 123 atctcactccttggtatccctatctccattctttatgtattccagttcaggaactacaac 182
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 347 atctcactccttggtatccctatctccattctttatgtattccagttcagtaactacaac 288

                                                                       
Query: 183 agaaagtaacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 agaaagtaacaagacaagactcaaaagataccatagcaggccaattcccacatgatttgt 228

                                                                       
Query: 243 atcttttaaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 atcttttaaagtaaaataagtactgggagatgggtcagcagcaaaagtcactattgccat 168

                                                                       
Query: 303 gacaattacaaggatctgaattcagatccttatgacccattttaaagaacagaagccagg 362
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 gacaattacaaggatatgaattcagatccttatgacccattttaaagaacagaagccagg 108

                                                                       
Query: 363 caatgtggcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 caatgtggcatgtgcccacaaccccaacaccagggtgtggatgaagaatactgaagctca 48

                                                          
Query: 423 ctgaccaggtaacttaactgatgagcttcagattcagcaagagaacc 469
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47  ctgaccaggtaacttaactgatgagcttcagattcagcaagagaacc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1095
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1085
Effective search space:   742140
Effective search space used:   742140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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