BAC Information

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BAC

Clone NameMSMg01-132H10
Chromosome2 (Build37)
Map Location 153,964,874 - 153,965,190
singlet/doubletsinglet
Overlap genenone
Upstream geneHck, Tm9sf4, Tspyl3, Plagl2, Pofut1, Kif3b, 2500004C02Rik, Asxl1, 8430427H17Rik, Commd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik
Downstream genePlunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132H10.T7 (MSMg01no132_h10.b1)MSMg01-132H10.TJ (MSMg01no132_h10.g1)
ACCAG339701AG339702
length700687
length of high quality
(start - end)
312 (41 - 352)504 (66 - 569)
definitionCHROMAT_FILE: MSMg01no132_h10.b1 PHD_FILE: MSMg01no132_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:59 2005CHROMAT_FILE: MSMg01no132_h10.g1 PHD_FILE: MSMg01no132_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTGATCTTTCTCTGACTTTTATCATGAAACATGAATCATGTTTTGGATTT
TGTCAAATGCTTTCTCACCATCTAACGAGATGATCATGTGATTTTTGTCT
TTGAGTTTGTTTATATAGTGGATTACGTTGATGGATTTCCATATATTAAA
CCATCCCTGCATCCCTGGAATGAAGCCTACTTGTTCATGATGGATGATCA
CTTTGATATGTTCTTGGATTTGATTGAGAGGATTTTATTGAGGATTTTTG
CATCGGTATTCATAAGGGAAATTGGTCTGAAGTTTTCTTTCTTTGTTGGA
TCTTTGTTTGCCTCCCCCCCCCCCAGTAATCGTGGCTTCATAGAATGAAT
TGAGTAGAGCATTTTCTGATACTATTTTGTGGAATAGGTTGAGGAGAATT
GAAATTAGGTCTTCTTTGAAGGTCTGATAGAATTCTGCACTAAACCCATC
TTGTACTGGGCTTCTTTTGGTTGGGAGACTATTAATGACTGCTTCTACTT
CTTTAGGGGAAATAAGACTGTTAAGATTGTTAATCTGCTCCTGATTTAAC
TTTGGTACCTGTTATCTGTCTAGGAAGTTGTCCATTTCATCCATATTTCC
CAGTTTTGTTGAGTATAGCCTTTTGTAACAGGATCTGATGATGTTTTGGA

TGCAGTGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCAGCTTTGAATAAACATTTTCCACATGGGAAACA
TCTTGCAAGTGATTTTCCATGTACTTCACACACAGGTGCTGCCTGCTAAG
TAGGACCCTGGTGGGGGAGCTGGCAGGACTGGAGTAGCGGAGGGGGATTG
CACGCCCACTAGAAGAACAACATAGGCTGGCCTGACTACCCAGTTCTCCC
AAAGTCTAGACTACCAACCAAGGAGTGTACCTGGAGGGACCCATGGCTAC
ACATACATATGTAGCAGAGATGGCCTTGCCTGACAGCAACAGGAGGGGAG
GCCCTTGGTCCTGGGGAGGTTGGATGCCTCATAGTAGGGTAGCTGAGAAG
TGGGATACCATTTGAGATGTAAACAAATGGAATGATTAATAAAAAACAAA
CGAAGAAACACACAAATACACACAAATAGTTGAATGAGCTTCCCACAGAC
TGAGGACTCTTCCCCTTAGCCAGTACCCAGGTTAAAGGATAGGCTGTCAC
CAGTTCTCTAGAAGTCCCCCCCTGTTGTCCAGCCCCACCCTAACGTAATC
CCCTGACCCCCAGCAATGTGCATCAGCTGTGATGTCTTCGACTTCTGTGC
CCCTGGAGCTGCAACACAAGCTCTTCAGGTCCAGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_h10.g1 MSMg01no132_h10.g1 CHROMAT_FILE:
MSMg01no132_h10.g1 PHD_FILE: MSMg01no132_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:59 2005
         (504 letters)



>mm_chr2_153964287_153965190
          Length = 904

 Score =  605 bits (313), Expect = e-177
 Identities = 316/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 187 aagtctagactaccaaccaaggagtgtacctggagggacccatggctacacatacatatg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 aagtctagactaccaaccaaggagtgtacctggagggacccatggctacacatacatatg 845

                                                                       
Query: 247 tagcagagatggccttgcctgacagcaacaggaggggaggcccttggtcctggggaggtt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 tagcagagatggccttgcctgacagcaacaggaggggaggcccttggtcctggggaggtt 785

                                                                       
Query: 307 ggatgcctcatagtagggtagctgagaagtgggataccatttgagatgtaaacaaatgga 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ggatgcctcatagtagggtagctgagaagtgggataccatttgagatgtaaacaaatgga 725

                                                                       
Query: 367 atgattaataaaaaacaaacgaagaaacacacaaatacacacaaatagttgaatgagctt 426
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atgattaataaaaaacaaacaaagaaacacacaaatacacacaaatagttgaatgagctt 665

                                                                       
Query: 427 cccacagactgaggactcttccccttagccagtacccaggttaaaggataggctgtcacc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cccacagactgaggactcttccccttagccagtacccaggttaaaggataggctgtcacc 605

                            
Query: 487 agttctctagaagtccc 503
           |||||||||||||||||
Sbjct: 604 agttctctagaagtccc 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)