Query= MSMg01no133_b03.b1 MSMg01no133_b03.b1 CHROMAT_FILE:
MSMg01no133_b03.b1 PHD_FILE: MSMg01no133_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
(611 letters)
>mm_chr2_125040943_125041952
Length = 1010
Score = 961 bits (497), Expect = 0.0
Identities = 581/633 (91%), Gaps = 41/633 (6%)
Strand = Plus / Plus
Query: 1 agctatgtagagaaactgtctcaat------------------acacacacacacacaca 42
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 179 agctatgtagagaaactgtctcaatacacacacagacacacacacacacacacacacaca 238
Query: 43 cacacacacacacacacacac---acacacacattcccatgagaataggtttgaatctga 99
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 239 cacacacacacacacacacacaagacacacacactcccatgagaataggtttgaatctga 298
Query: 100 agttggaactgatgtaaaattagtaataagggcctttgaggtggctcagcaggttagggt 159
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 299 agttggaactgatgtaaaattagtaataagggcctttgaggtggctcagcaggtcagggt 358
Query: 160 gccggccaccaggcctgatcacctgtgtttgatccctagaacccacacggtggaaggaga 219
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gccggccaccagacctgatcacctgtgtttgatccctagaacccacacggtggaaggaga 418
Query: 220 aagtaattccccc-aaattgtcctctgacttccatatgcatgctatggcacacatgtgcc 278
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 419 aagtaattccccccaaattgtcctctgacttccatatgcatgctatggcacatatgtgcc 478
Query: 279 cgcacatacacatgtgcaaaataaataaatgcttaaaatttgtgattagaataaggcttt 338
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgcacatacacatgtgcaaaataaataaatgcttaaaatttgtgattagaataaggcttt 538
Query: 339 acattttttttcttttcccatcattgtcttatttgtatattagtctctagtaaatgacac 398
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 539 acattttttt-cttttcccattattgtcttatttgtatattagtctctagtaaatgacac 597
Query: 399 agtctggaaaagcaattgaaagttcacagtcaaagctcagtcccctgctcttctgattga 458
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 598 agtctggaaaagcaatggaaagttcaaagtcaaagctcagtcccctgctcttccgattga 657
Query: 459 gagggagcacggacgtcattcatcctcctcccattctgattgagagggagcacgggattg 518
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gagggagcacggacgtcattcatcctcctcccattctgattgagagggagcac------- 710
Query: 519 agagggagcaccagcgtcattctttaagcaaggcttgttcgagcctccattacagcactt 578
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 -----------cagcgtcattctttaagcaaggcttgttcgagcctccattacagcactt 759
Query: 579 gttttggtttggaagtactttttctgaatgtca 611
||||||||| ||| |||||||||||||||||||
Sbjct: 760 gttttggttcggaggtactttttctgaatgtca 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_b03.g1 MSMg01no133_b03.g1 CHROMAT_FILE:
MSMg01no133_b03.g1 PHD_FILE: MSMg01no133_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:47 2005
(234 letters)
>mm_chr2_125170140_125170774
Length = 635
Score = 410 bits (212), Expect = e-119
Identities = 227/232 (97%), Gaps = 1/232 (0%)
Strand = Plus / Minus
Query: 4 ggaatttgaacatatctgaatccacgtgcttttataaagccagggcaagggccaggcaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggaatttgaacatatctgaatccacgtgcttttataaagccagggcaagggccaggcaca 376
Query: 64 gcaagactttgataatcatgaaagaacaagtctcatgctcttcaggatgatattatgggt 123
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gcaaggctttgataatcatgaaagaacaagtctcatgctcttcaggatgatattatgggt 316
Query: 124 gtgtcacttcatttgcattctgaggcataacactggaagaaataattatgtaaatcctta 183
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 315 gggtcacttcatttgcattctgaggcataacactggaagaaattattatgtaaatcctta 256
Query: 184 ttgcttgatggggaagttataagatgctggaaaaaa-ttagacttggaggga 234
||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 255 ttgcttgatggagaagttataagatgctggaaaaaaattagacttggaggga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 635
Length adjustment: 9
Effective length of query: 225
Effective length of database: 626
Effective search space: 140850
Effective search space used: 140850
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
