BAC Information

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BAC

Clone NameMSMg01-133D06
Chromosome2 (Build37)
Map Location 21,773,756 - 21,773,987
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133D06.T7 (MSMg01no133_d06.b1)MSMg01-133D06.TJ (MSMg01no133_d06.g1)
ACCAG340244AG340245
length705706
length of high quality
(start - end)
232 (128 - 359)145 (127 - 271)
definitionCHROMAT_FILE: MSMg01no133_d06.b1 PHD_FILE: MSMg01no133_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:57 2005CHROMAT_FILE: MSMg01no133_d06.g1 PHD_FILE: MSMg01no133_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAATCCTCCTGCCTCAGCCTCCTAAATGCTAGTGATTCAGATGTA
TACCACCACACCTGGCTCTCCTTCGATTCTTGATTTTAAAAGTTACCAGT
CAGGAGGAATTTGAAGATAAATTGCTAGACAAATGGCAAACTTCTGGAAC
TTTGCTCTTAGAATCAAGCACAGCACATGCCACTAGCTACTAATGAGGCA
GAAGGGGGATCATTGTCTCTCTCAAGTGACCATGTTAAACACTGCTTTAG
AACAAACCCTAAACATCCAGTGATCTTCTTGAGATAAAATCCGCCAAGTC
ACAGAAACCTATTTTCTCCCCCTGCGTCCCTCCAAGGNCCAGAAAATGTC
TTCAACAAGATCATAGAAGAAAAAAAAAAAAAGATAAAGAGGGAGGTGCC
AATAAACATACAAGAAGCTTACAGAATACCAAATAGATTGGACCAGAAAG
GAAAATCCTGCTGCCACATAATAATCAAAACACTAAATGTACAGAACAAA
GAATATTAAAAGCTGTCAAGGAAAAGGGTCAAAAACATAAGGCAAACCCA
TCAGAGTTACACCTGTCCTCTCAACAGAAACTCTAAAAGCCTAGGCAGAT
TTCTCTGTAGATGCTAAGAGACCACAGACGTCAGCCCAGACTACGATACC
CCCCA
CCATGAAGTGCTAGGCCTGGCGACGCCTGGATTCCAAAATGGGGNGAACT
ATAGAAGTATCCCAGAAATTCAGATAGGGGTTATAGAGGTGACTCAGTGG
TTAAGAGCACTGGCTAATTTTCCAGAGAACCTAGTTTTGAATCCCAGCTA
CCACATGGCAGCTCACAACCATCTGTAACTCTAGTTCCACAAGGTTTGAC
ACCCTTGGTGGGTACCATGCACACACATGGTGCATGGACATACCTGTTGG
CATATTCCTTCTTACATATTCACCACATTATATGTATATATTTGCAAATA
AATATTTGAATTGTCCGCCTTTTATGCAGATGGTATCAGGACCAATGGTG
TTAGAATAATCTGTCAAATACTCTGATACAGTCATGCGACCAACTCTGTA
TACGTGCGTGCTTGCGTTGCGCTGTTTCAACCACAGCGCCGCTTATCAGC
TTCTGTAGCTTCATCTATTACAGCATTTGTTTTCTGAGAGGCTCAATTTT
TTTGCCACTGTTAACCCGTGATCACCCATTGACCCCTACTGCGCTTCTAC
GTGTCGTCACTTTATTGTTATGTCCTGTGCTCATCTCTACTTGCCCATCC
ACATGTCTTATCTTCCCACACTTCGCTGTCTATATTTTCTGCTCCCACTA
TTTCTCTCCTTCTCCCTTCCTTCTCATTCACGCCTCTTCCATCTCTCCTC
CCTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_d06.b1 MSMg01no133_d06.b1 CHROMAT_FILE:
MSMg01no133_d06.b1 PHD_FILE: MSMg01no133_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:57 2005
         (232 letters)



>mm_chr2_21773556_21774187
          Length = 632

 Score =  433 bits (224), Expect = e-126
 Identities = 230/232 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgattttaaaagttaccagtcaggaggaatttgaagataaattgctagacaaatggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tcttgattttaaaagttaccagtcaggaggaatttgaagataaattgctagacaaatggc 373

                                                                       
Query: 61  aaacttctggaactttgctcttagaatcaagcacagcacatgccactagctactaatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aaacttctggaactttgctcttagaatcaagcacagcacatgccactagctactaatgag 313

                                                                       
Query: 121 gcagaagggggatcattgtctctctcaagtgaccatgttaaacactgctttagaacaaac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcagaagggggatcgttgtctctctcaagtgaccatgttaaacactgctttagaacaaac 253

                                                               
Query: 181 cctaaacatccagtgatcttcttgagataaaatccgccaagtcacagaaacc 232
           |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 252 cctaaacatccagtgatcatcttgagataaaatccgccaagtcacagaaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)