Query= MSMg01no134_b15.b1 MSMg01no134_b15.b1 CHROMAT_FILE:
MSMg01no134_b15.b1 PHD_FILE: MSMg01no134_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:10 2005
(312 letters)
>mm_chr2_14747299_14748010
Length = 712
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Minus
Query: 1 gacttttcgactagcctgaagtccatagaaagactgtccactaaccccaaacctaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gacttttcgactagcctgaagtccatagaaagactgtccactaaccccaaacctaccaaa 453
Query: 61 caacaatgaaaccctaacatgagagctacccaggccaaagggaacagaaagcccaggctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 caacaatgaaaccctaacatgagagctacccaggccaaagggaacagaaagcccaggctt 393
Query: 121 gggaaaaaaagttcaaaagaaaaaatctccttgggaaaattcctcagcccttcaaggcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gggaaaaaaagttcaaaagaaaaaatctccttgggaaaattcctcagcccttcaaggcag 333
Query: 181 gaatgagatgaacaggaaataaataactcatttagagtcatagagattaccactactgtt 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaatgagatgaacaggagataaataactcatttagagtcatagagattaccactactgtt 273
Query: 241 aaatctactgttaaacacctctgccattattatccacaatgtctttgctgaaatgactca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aaatctactgttaaacacctctgccattattatccacaatgtctttgctgaaatgactca 213
Query: 301 aaatcattggtt 312
||||||||||||
Sbjct: 212 aaatcattggtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_b15.g1 MSMg01no134_b15.g1 CHROMAT_FILE:
MSMg01no134_b15.g1 PHD_FILE: MSMg01no134_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:10 2005
(744 letters)
>mm_chr2_14583586_14584732
Length = 1147
Score = 1230 bits (636), Expect = 0.0
Identities = 718/749 (95%), Gaps = 9/749 (1%)
Strand = Plus / Plus
Query: 2 tgcccagnaaaatttcatgctatgaaactactgtttcgttagatgactgtgaaatcattg 61
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 202 tgcccagtaaaatttcatgctatgaaactactgtttccttagatgactgtgaaatcattg 261
Query: 62 tctctcaactggaaaatgtacatgtttcaatgtaactaaagtatgcaacgccaagctaat 121
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tatctcaactggaaaatgtacatgtttcaatgtaactaaagtatgcaacgccaagctaat 321
Query: 122 caaatgtgttctagatcagctgctggcccactagatgtgccatggggctctttcccttcc 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 caaatgtgttctggatcagctgctggcccactagatgtgccatggggctctttcccttcc 381
Query: 182 ataggctggagctgacctccact-gaaggaaaatgaaaatgtgcatcttatatccatgtc 240
|| |||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||
Sbjct: 382 atgggctggagctgacctc-acccgaaggaaaatggaaatgtgcatcttatttccatgtc 440
Query: 241 caggaagaactgcctagcaaatcactcttcctcaaaggtttaaaaaaaatgtggcttaat 300
| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 441 cgggaagaactgcctagcaaatcactcttcctcaaaggc--acaaaaaatgtggcttaat 498
Query: 301 ttgtcatcattgtatgctctggaaagaaatttttttatggcaaggccaaacttttgaagg 360
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 499 ttgtcatcattgtatgctctggaaagaaactgttttatggcaaggccaaacttttgaagg 558
Query: 361 attaataaagaacttaggttgatgggtgtgtttcattgggagctttctatcttagtgtat 420
|||| | | | |||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 559 attagtgatggtcttaggttgatgggtgtgtttcgttgggagctttctatcttaatgtat 618
Query: 421 atgtgtttttt-----cagttttctagaaaagtcttttcttaactctgcctgtgttcaga 475
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atgtgtttttttttttcagttttctagaaaagtcttttcttaactctgcctgtgttcaga 678
Query: 476 ctttatagctggaaataggagtaggcatgtgcttttccagatggcttgcttgcttttcat 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ctttatagctggaaataggagtaggcatgtgcttttccagatggcttgcttgcttttcat 738
Query: 536 cagcttggtggtttcataagctcatacctacattagcatcacttttgaacttactacaca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cagcttggtggtttcataagctcatacctacattagcatcacttttgaacttactacaca 798
Query: 596 gactatgatggaagccatgaagtaaacatgttgtgtctgctgactttgaagtatttgtac 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gactatgatggaagccatgaagtaaacatgttgtgtctgctgactttgaagtatttgtac 858
Query: 656 tttccttagttaaaaagaactgagtgtattagctgttttttatttatatacagtgtgccc 715
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 859 tttccttggttaaaaagaactgagtgtattagctgtcttttatttatatacagtgtgccc 918
Query: 716 agatgttatattttgaacttattgttctt 744
|||||||||||||||||||||||||||||
Sbjct: 919 agatgttatattttgaacttattgttctt 947
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1147
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1137
Effective search space: 834558
Effective search space used: 834558
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
