BAC Information

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BAC

Clone NameMSMg01-134E10
Chromosome2 (Build37)
Map Location 12,827,261 - 12,827,834
singlet/doubletsinglet
Overlap genenone
Upstream geneEG635919, LOC667247, Itga8, 2310047O13Rik, LOC100040837
Downstream genePter, C1ql3, Rsu1, Cubn, Trdmt1, Vim, St8sia6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134E10.T7 (MSMg01no134_e10.b1)MSMg01-134E10.TJ (MSMg01no134_e10.g1)
ACCAG341030AG341031
length1,2541,161
length of high quality
(start - end)
89 (91 - 179)580 (76 - 655)
definitionCHROMAT_FILE: MSMg01no134_e10.b1 PHD_FILE: MSMg01no134_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:31 2005CHROMAT_FILE: MSMg01no134_e10.g1 PHD_FILE: MSMg01no134_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCCCTTTTNAAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCATTTGCCCCACTTGTCTGTAAGACTTTAGGTAACTGAG
TAGTTGTGGGTTTGCACCCTTCAGTACCAAATAATGACCGAAATGATTTT
GGGGGGGGGAGAATGGGGCATGGGGGAGANNNNNNNNNNNCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTNNT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTNTTTTTNT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTT
TNTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTT
TTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
NNTTTTNTTTTTNTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTNTTTTTTTTTTTTTNTTTTTNNTTTTTTTTTNTTTTTTTTTTT
TTTTTNNTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTT
CCCTTTTTTTTTTTAACATGGAGNCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTAACCTACTCTGTGGTCTTCCT
TCTGTTTCTCGATCACCTTCCTCCTCCTGTTCTCCTGATTACTGGAGGTT
TATCCATGTTCATGGATTTTTTTTTTTTGCTTAGATTCATTAAAGTTTTA
CACAGACAAATTCCTTAACAATTCTTGCAAAACACAGGTCCTACTAACAT
GACTAATCTACTAAATTGTAAAGCTTAAATTATCTGGAATTTTCAGTGTT
TCTGTACAAACACTTCATCCCATGGCTATTTCTGTCCCATTTTGCAATCC
ATCAAAAGCTCATGTCTAGATGACAGAGAATAACCTAGTTAGTTAAAGAG
TACTGTGTATTTTGCATTCTAGAAGCAAAGGTTTGGAAACTTGGCACCCT
CTTTGTAAAGGACATTATTCCACTGGGTAAACCTCTGCCAGCAGGTACAA
AGTTCTTTAGGACATCCTTGTTAATTTGTTAACAATAAACTTTCTCTTTT
TTAGAGATAAAACCTAATTTTTATTTCAATTATTATTGATGAAAACCTTT
GTGAAATGCATAGACTTTGTTTTTGTTTTTTGTTGTTGTTGTTGGTGGTG
GTTTNNNNNNNNNNNNNNNNTNTNNNTTTNNTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTNT
TTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_e10.g1 MSMg01no134_e10.g1 CHROMAT_FILE:
MSMg01no134_e10.g1 PHD_FILE: MSMg01no134_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:31 2005
         (580 letters)



>mm_chr2_12827055_12828035
          Length = 981

 Score = 1071 bits (554), Expect = 0.0
 Identities = 569/574 (99%), Gaps = 1/574 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   cctactctgtggtcttccttctgtttctcgatcaccttcctcctcctgttctcctgatta 66
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 207 cctactctgtggtcttccttctgtttctcgatcatcttcctcctcctgttctcctgatta 266

                                                                       
Query: 67  ctggaggtttatccatgttcatggatttttttttttt-gcttagattcattaaagtttta 125
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 267 ctggaggtttatccatgttcatggatttttttttttttgcttagattcattaaagtttta 326

                                                                       
Query: 126 cacagacaaattccttaacaattcttgcaaaacacaggtcctactaacatgactaatcta 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cacagacaaattccttaacaattcttgcaaaacacaggtcctactaacatgactaatcta 386

                                                                       
Query: 186 ctaaattgtaaagcttaaattatctggaattttcagtgtttctgtacaaacacttcatcc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctaaattgtaaagcttaaattatctggaattttcagtgtttctgtacaaacacttcatcc 446

                                                                       
Query: 246 catggctatttctgtcccattttgcaatccatcaaaagctcatgtctagatgacagagaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catggctatttctgtcccattttgcaatccatcaaaagctcatgtctagatgacagagaa 506

                                                                       
Query: 306 taacctagttagttaaagagtactgtgtattttgcattctagaagcaaaggtttggaaac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 taacctagttagttaaagagtactgtgtattttgcattctagaagcaaaggtttggaaac 566

                                                                       
Query: 366 ttggcaccctctttgtaaaggacattattccactgggtaaacctctgccagcaggtacaa 425
           ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 567 ttggcaccctctttgtaaaggacattattccaccgggtaaacctctgccagtaggtacaa 626

                                                                       
Query: 426 agttctttaggacatccttgttaatttgttaacaataaactttctcttttttagagataa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 agttctttaggacatccttgttaatttgttaacaataaactttctcttttttagagataa 686

                                                                       
Query: 486 aacctaatttttatttcaattattattgatgaaaacctttgtgaaatgcatagactttgt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aacctaatttttatttcaattattattgatgaaaacctttgtgaaatgcatagactttgt 746

                                             
Query: 546 ttttgttttttgttgttgttgttggtggtggttt 579
           ||||||||||||||||||||| ||||||||||||
Sbjct: 747 ttttgttttttgttgttgttggtggtggtggttt 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space:   553470
Effective search space used:   553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)