Query= MSMg01no134_g22.b1 MSMg01no134_g22.b1 CHROMAT_FILE:
MSMg01no134_g22.b1 PHD_FILE: MSMg01no134_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(606 letters)
>mm_chr2_165535493_165536496
Length = 1004
Score = 955 bits (494), Expect = 0.0
Identities = 580/612 (94%), Gaps = 10/612 (1%)
Strand = Plus / Minus
Query: 1 gacactc----cttagtacagggcacccccaagcactcggggaacacgtgtcagttttgt 56
||||||| ||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct: 815 gacactccttacttagtacagggcacacgcaagcactcggggaacaggtgtcagttttgt 756
Query: 57 gacttctggggtgtcacttgtctctctgatgg--tcaacaggccatcaaatggttctgac 114
||||||||||||||||| |||||||| | || || |||||||||||||||||||||||
Sbjct: 755 gacttctggggtgtcacctgtctctc--a-ggtttc-acaggccatcaaatggttctgac 700
Query: 115 ttcctcaccgctggctgcatcatctatgccctggcagcgccgtggttgcctaactgtctg 174
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 699 ttcctcaccgctggctgcatcatctatgccctgacagtgccgtggttgcctaactctctg 640
Query: 175 ctagtcctaactgcccaggagacacaggtatgaggctcctaacaaggctgctgtgtgcat 234
|| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 639 ctggtcctaactgcccaggagacacgggtgtgaggctcctaacaaggctgctgtgtgcat 580
Query: 235 ccctcccacccactgtggaccctggatgtcttggaggagataaggaagggctgcctggtg 294
||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 579 ccctcccacccgctgtgggccctggatgtcttggaggagataagggcgggctgcctggtg 520
Query: 295 taggtgtccctgcattgttttctgcacctgttctccttcacccaggcatccagcatggga 354
||||||||||||||| | |||||||||||||||| || ||| ||||||||||||||||
Sbjct: 519 taggtgtccctgcatcgcgctctgcacctgttctccctcccccgggcatccagcatggga 460
Query: 355 ctgctggccatttttggctgtcatgataggtgtgtcataattcatatttctctggttggt 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctgctggccatttttggctgtcatgataggtgtgtcataattcatatttctctggttggt 400
Query: 415 tgctggtgactctgagtgtccctttcaaggcctgctgccctctgtgtgtcttctttttaa 474
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 399 tgctggtgactctgagtgtccctttcagggcctgctgccctctgtgtgtcttctttttaa 340
Query: 475 tgagatggtgatggttgctatggaaactcctctctttccagggctgagcctagctttacc 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgagatggtgatggttgctatggaaactcctctctttccagggctgagcctagctttacc 280
Query: 535 tttacctcagcccttcagggcccttcactgactgtgagatagataaggacagaagagcac 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttacctcagcccttcagggcccttcactgactgtgagatagataaggacagaagagcac 220
Query: 595 tgaaccctccat 606
||||||||||||
Sbjct: 219 tgaaccctccat 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1004
Length adjustment: 10
Effective length of query: 596
Effective length of database: 994
Effective search space: 592424
Effective search space used: 592424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_g22.g1 MSMg01no134_g22.g1 CHROMAT_FILE:
MSMg01no134_g22.g1 PHD_FILE: MSMg01no134_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:50 2005
(580 letters)
>mm_chr2_165426472_165427450
Length = 979
Score = 1056 bits (546), Expect = 0.0
Identities = 564/570 (98%), Gaps = 1/570 (0%)
Strand = Plus / Plus
Query: 11 ggcgcttctgctcttgacttgatctgtgctctcccaggagcagcaaagacgtcttgtggt 70
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggcgcttctgctcttgactagatctgtgctctcccaggagcagcaaagacgtcttgtggt 270
Query: 71 aaaaaggagacagagtctggaatggcggtctcctcgggaactttttcacccgttctagag 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaaaggagacagagtctggaatggcggtctcctcgggaactttttcacccgttctagag 330
Query: 131 aaaaattgggttctgggtttgtccgtcaccactgataactcctccggatattccgatctg 190
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 331 aaaaattgggttctgggtttgtccgtcaccactgataacgcctccggatattccgatctg 390
Query: 191 tgagaatcagagactaaagtgccctggggtctcctgatcagttttctagcggtgctcact 250
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgagaatcagagactacagtgccctggggtctcctgatcagttttctagcggtgctcact 450
Query: 251 ttgtggttgaaatagtaacagtttcccatatctttcttttttgtttctgtgatttttttt 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 451 ttgtggttgaaatagtaacagtttcccatatctttcttttttgtttctgtgattttgttt 510
Query: 311 tttaaatgtggggaacacagtgtgaagacaagcccttgccttgccttcctgaaatccaca 370
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tt-aaatgtggggaacacagtgtgaagacaagcccttgccttgccttcctgaaatccaca 569
Query: 371 gagagtgtatcttcatgaccctgactttggtaccaacccaggtactgatgggaattccac 430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 570 gagagtgtatcttcatgaccctgactttggtaccaacccaggtgctgatgggaattccac 629
Query: 431 agagggattaagcctcttctgagagacagaaaaggtgttagcccaaagaggttgtttgct 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 agagggattaagcctcttctgagagacagaaaaggtgttagcccaaagaggttgtttgct 689
Query: 491 tttgtgggtgtgcactatttacacatatgccgactttttgtttaggaatgttctagcttc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 tttgtgggtgtgcactatttacacatatgccgactttttgtttaggaatgttctagcttc 749
Query: 551 gtttatctctccagcaaaggactgaggacc 580
||||||||||||||||||||||||||||||
Sbjct: 750 gtttatctctccagcaaaggactgaggacc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
