Query= MSMg01no134_m15.b1 MSMg01no134_m15.b1 CHROMAT_FILE:
MSMg01no134_m15.b1 PHD_FILE: MSMg01no134_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:33 2005
(677 letters)
>mm_chr2_69981253_69982329
Length = 1077
Score = 1077 bits (557), Expect = 0.0
Identities = 643/681 (94%), Gaps = 17/681 (2%)
Strand = Plus / Plus
Query: 1 ggcccatgattgcctgcaggtacaaatccagattcccttctctagcctctagtccaccac 60
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ggcccatgattgcctgcaggtagaaatccagattccattctctagcctctagtccaccac 260
Query: 61 agtcttcttttcttttgattctgtccagatgcctctgactctccagccatatgaagtaaa 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 agtcttcttttcttttgattctgtccagatgcctttgactctccagccatatgaagtaaa 320
Query: 121 gctccctacacaaagcatgcctgtttagttcttcctgttatacactatatacactgcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctccctacacaaagcatgcctgtttagttcttcctgttatacactatatacactgcaca 380
Query: 181 cactgcatacactgcacacactatgtacactgttcaaactgcatacactgcactactgta 240
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 cactgcatatactgcacacactatgtacactgctcaaactgcatacactgcactactgta 440
Query: 241 catgatacactgtttatacggtatatactgcatacacggttttctt----tgtatacacc 296
||||||||||||| |||||| |||||||||||||||| | || |||||||||
Sbjct: 441 catgatacactgtatatacgttatatactgcatacactg----ctcacactgtatacact 496
Query: 297 atatatacactgcatacactgcacacactgcatacattgcacagattgtacatacatcac 356
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 497 atatatacactgcacacactgcacacactgcacacattgcacagattgtacatacttcac 556
Query: 357 cacagtacatgccacacactgtacatgctgcacacattgcatacactgcacacactgtat 416
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 cacagtacatgccacacactgtacatgctgcacacattgtatacactgcacacactgtat 616
Query: 417 accctgcatgcactgctcacactgcatatgctgtacacactgtatacactgctcacactg 476
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 617 acactgcatgcactgctcacactgcatatgctgtacacactgtattcactgctcacactg 676
Query: 477 tatatattgcacacactctatacactgtatacactgcatacactgcatatgctgtataca 536
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 677 tatatattgcacacactctatacactg---------catacactgcatatgctgtataca 727
Query: 537 ctgctcacactgtatacactgaacacactatatgcactgcaccactgtacatgtcacaca 596
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ctgctcacactatatacactgcacacactatatgcactgcaccactgtacatgtcacaca 787
Query: 597 ccatatatagtgcacatactgtatacaatgtatagacagcatacactgcacacactgtat 656
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 788 ccatatatagtgcacatagtgtatacactgtatagacagcatacactgcacacactgtat 847
Query: 657 acactgtatgcattgtacaca 677
|||||||| ||||||||||||
Sbjct: 848 acactgtacgcattgtacaca 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space: 711689
Effective search space used: 711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_m15.g1 MSMg01no134_m15.g1 CHROMAT_FILE:
MSMg01no134_m15.g1 PHD_FILE: MSMg01no134_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:33 2005
(635 letters)
>mm_chr2_70174465_70175496
Length = 1032
Score = 1120 bits (579), Expect = 0.0
Identities = 620/635 (97%), Gaps = 3/635 (0%)
Strand = Plus / Minus
Query: 1 ttctccagagttctccatctctctcttcccccacggcaaccattcagataaccagaacaa 60
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 832 ttctccaaagttctccatctctctcttcccccacggcaaccattcagataaaaagaacaa 773
Query: 61 acctaggccactctgttggttctgatgaagtctaggcagtcactaagatgcagagaggcg 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 772 acctaggccactctgttggttc---tgaagtctaggcagtcactaagatgcagagaggcg 716
Query: 121 gcagcgacttcactgccttcaacaactttcacggccaacacttgcttgggacaatgcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 gcagcgacttcactgccttcaacaactttcacggccaacacttgcttgggacaatgcagg 656
Query: 181 tgcaaactgtcttgattagatctgtgttctgacaggctgagggtcagctgccgggagtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tgcaaactgtcttgattagatctgtgttctgacaggctgagggtcagctgccgggagtca 596
Query: 241 caaaatgagtttgggactaaacactgatttttttttccttctaactcggagaagaaaatg 300
|||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 595 caaaatgagtttgggactaaacactgatagttatttccttctaacttggagaagaaaatg 536
Query: 301 aaataaagtttaggacacgtttaatacgtggtgggacgcatacacagagagatcattttt 360
|| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 aagtaaagtttaggaaatgtttaatacgtggtgggacgcatacacagagagatcattttt 476
Query: 361 atatgaagggaaaatattatttcttgttacagctcatacttgagtatcttttcttaagtt 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 475 atatgaagggaaaatattatttcttgttacagctcatacttgggtatcttttcttaagtt 416
Query: 421 cttcaaaatggacctgacatgtgttttggcagagctccatccccaggctgcgtgtggtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttcaaaatggacctgacatgtgttttggcagagctccatccccaggctgcgtgtggtga 356
Query: 481 gggtctcaaggcagacaaaagagccaagtgctggactgccagacttgcgaaccctcaaag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 355 gggtctcaaggcagacaaaagagccaagtgctggactgccagacttgcgaacccgcaaag 296
Query: 541 aacgcagaggaggagctgagaagcagccagaaccaaccacattttatcatcattgcaatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aacgcagaggaggagctgagaagcagccagaaccaaccacattttatcatcattgcaatt 236
Query: 601 gccttttagtgtaggactataactttagagacata 635
|||||||||||||||||||||||||||||||||||
Sbjct: 235 gccttttagtgtaggactataactttagagacata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1032
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1022
Effective search space: 638750
Effective search space used: 638750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
