BAC Information

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BAC

Clone NameMSMg01-134N16
Chromosome2 (Build37)
Map Location 34,390,575 - 34,390,917
singlet/doubletsinglet
Overlap geneMapkap1
Upstream geneLOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3, LOC665948
Downstream geneLOC623448, LOC623269, Gapvd1, Hspa5, Rabepk, Fbxw2, EG623370, Psmd5, D730039F16Rik, Phf19, Traf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134N16.T7 (MSMg01no134_n16.b1)MSMg01-134N16.TJ (MSMg01no134_n16.g1)
ACCAG341465AG341466
length1,1721,184
length of high quality
(start - end)
343 (472 - 814)253 (195 - 447)
definitionCHROMAT_FILE: MSMg01no134_n16.b1 PHD_FILE: MSMg01no134_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:41 2005CHROMAT_FILE: MSMg01no134_n16.g1 PHD_FILE: MSMg01no134_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATTAGTNNNNNGAACATTGGGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGACAGCACAATTCCTTTTGAGAAGGTTAAAAAAAA
GTTCCACTTTATTCCTAGACTTTTAAAAAAAAGGCATCCTTAGAATATTG
AGAATTGTATTACAAAACTCACTATTATAAGACCCCCAATTCTACAGAGT
GAATGCTCATTAAATACCCTTGAGTATCTGAAGCTATTTAAAAGCTATTA
GATTGGCACCTGGAACCCCCAAACATCTAATCTCCCCTGGGATAGAGAGG
CTGTGCCTCTTCAATCATCCCCTAAATGCAAAGAGGTTTGACCCCCATGC
AATAGATAAAAGTCACCCAAAAAATGAACAAAAGAGGTGTTTGGAGAAGC
CGAGCAGTATTCATCCCAGCTAACGACTTGTTCATTATGAGTGATGATGG
ATAAAGACTTCTCACGCTGACATGAAATCAAGATTTATATGCATTGAATC
CTCTCCCAACTTGTGGGAAGATCATCATCATTTAATTCTATCTCTGCGGC
CAGTGATGGGCATCCAGAGAGCTGGTTATCAAACGGCGCAGTCAGCTGGC
AAAAGCCGAAACGTGCAGTTGGCACATCTGGACGGAGCCGCCACAGCCGA
GGGTGAACAATGACTCCTGGCAAGCATCCAAATTGCTTGCAGACGCTAGC
AGGTCTCATCTACAACCGCCCCTACCAGCATCTCTCTCTCTCTCCCTCTC
TTTTATGAGAATCAGATTTTCATTGCTCCATTCAATTGCTCTCCTCTGCC
ATTTTTTACAGCTCTTATCGTTTCCCTGGAATATGGCCTTGAGACAGCTC
ATCCGTGTCCTTCACTGTGTTATCCCTTCTAACTTTTATTAAAACTTCCG
CTTTCATCCGAAGATAGCTAATTAAATCCGGAACAGATTATATGCCTCCC
CCTAAAAGAGAACACACTTTTTTTCCTCGGGTTGAACCAAGCTCCCCTCC
CTTTCAAAAGGGGGAGCTCCAAGGTATTTTAAAAAGTCTCTTCCCCCTAC
AGTAATTCTTGAATCCTTGCCTTGGCCATAATATGGGCTCGACTTTTTAA
CAATAATAACCCTGCTTATAAATAAAATCCTTTTCAATTTACTTTTTAAA
AAATAACGTTCTCCTAAAAATA
NNNGGAAAACACGGAGTCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATGAATGCAGAGAAGGTATTGTTTCTTCT
GGGCCTCTGTTTGATACAATCTTTCCGCTCCCAATTTCAATGGTGGTCTC
TGAGCCTTTCAGTGAAGGTGCTATGTATCCTGTTGCAGGGCATTTGATCA
CACTGTGAACCCCACGGTTGTGTTAGTTACTGAAAAAACCTGTTTTTAGT
TGTGGTGTGGCTCAGCCCTTAGCTCACACCTTTAATCCCTCTGGTTGGAA
TACAGATGTGCCCTTAGTACACACCTTTAATCGCAAACAATGAAGGTAAA
GTTAGTTGGTAAATGGAAGCAAGCAGCCATGTTTGAAAGTGATGTCTAAT
TGAATGACAAAGTGATGCATCAGAAAAAGATTTGAAAGAATAGGATTTTT
TTTACTCTCACGAGAAGAGGGAAGGAGGCAGTATAACAAGGAGAGTTTGA
TACAGACAGGTTGAAGAGAGAACAAGCTAGACACAGGTGAAGATAGAATG
AGCCAAAGAAAAAGAACCAGGGGATTAGAACAGGTTGCTTAAATTAGTAT
GAAGCCTAGCAGAGCAATTCTGTCAGAAACTGAGTGGAGCCAGATTGAAT
CAGTCAGCTTGGAGAAAAGTTTGAGCCAGAATCGCCAGTCCGAGATCAGA
AAGTACTAGAAAGGATGATCGTATTCAGCAGCAAACATTTCAGGCTGAAA
ACATTCTAGGCTTTGATTAGATTCAATGGAGGCTGAAAAATTCCAGGACT
AGGTCTAGGTTAGCAGACTGAGATAGTAAGCCTCCAGACGACAATTACTA
CAGAACGACAGGAGAATAAGTTACATTTACCGTGTCCTACTGTGTCTGAT
CACTCCAAGAACAATTCATCTGTGCACCATGGCCCACTTGTGAAAGTTTC
GTGAATAACCCTTTGCCCCTGGCCGTTATATAACCCAAATCAAACCTTAT
CCTATCTATATAATTTCCCCTACTTTCTCTGAAAAGGTGGGAAAAGCCCC
CCTTTACCTTGGCTTTTAAAATATTATCTTCTAAAAACCCCTTTGAAACT
TATTTCTCCCTGTTTCAAATAAATAATTTGTCCGGCAAAATCTTTTCCTT
TCTTATAAAGGTCGCCTTCAATATCAAACAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_n16.b1 MSMg01no134_n16.b1 CHROMAT_FILE:
MSMg01no134_n16.b1 PHD_FILE: MSMg01no134_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:41 2005
         (343 letters)



>mm_chr2_34390375_34391117
          Length = 743

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaaatcaagatttatatgcattgaatcctctcccaacttgtgggaagatcatcatcat 60
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 543 atgaaatcaagatttatatgcattgtttcctctcccaacttgtgggaagatcatcatcat 484

                                                                       
Query: 61  ttaattctatctctgcggccagtgatgggcatccagagagctggttatcaaacggcgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttaattctatctctgcggccagtgatgggcatccagagagctggttatcaaacggcgcag 424

                                                                       
Query: 121 tcagctggcaaaagccgaaacgtgcagttggcacatctggacggagccgccacagccgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tcagctggcaaaagccgaaacgtgcagttggcacatctggacggagccgccacagccgag 364

                                                                       
Query: 181 ggtgaacaatgactcctggcaagcatccaaattgcttgcagacgctagcaggtctcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggtgaacaatgactcctggcaagcatccaaattgcttgcagacgctagcaggtctcatct 304

                                                                       
Query: 241 acaaccgcccctaccagcatctctctctctctccctctcttttatgagaatcagattttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 acaaccgcccctaccagcatctctctctctctccctctcttttatgagaatcagattttc 244

                                                      
Query: 301 attgctccattcaattgctctcctctgccattttttacagctc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 attgctccattcaattgctctcctctgccattttttacagctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)