Query= MSMg01no135_d20.b1 MSMg01no135_d20.b1 CHROMAT_FILE:
MSMg01no135_d20.b1 PHD_FILE: MSMg01no135_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:19 2005
(648 letters)
>mm_chr2_179620066_179621114
Length = 1049
Score = 1203 bits (622), Expect = 0.0
Identities = 637/642 (99%), Gaps = 1/642 (0%)
Strand = Plus / Plus
Query: 8 gagaca-catacctgtgattccaacacccaggaaaaagatccatgccccaagaaacctgg 66
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 208 gagacaacatacctgtgattccaacacccaggaaaaagatcgatgccccaagaaacccgg 267
Query: 67 cttctgcctcatccgggtgtggggctaactagctagagacactttattccaacctccctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cttctgcctcatccgggtgtggggctaactagctagagacactttattccaacctccctc 327
Query: 127 tcctctcattggccagaacccagaagaagccagagactgcggtaaagggacagtggaaac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcctctcattggccagaacccagaagaagccagagactgcggtaaagggacagtggaaac 387
Query: 187 caggcccccataaaaagcaaggcagggagagtctaagagactgggcagtaggaacggcca 246
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 caggcccccatagaaagcaaggcagggagagtctaagagactgggcagtaggaacggcca 447
Query: 247 gccccacctctgtaggaagccccagttaacctgtcccttcttccaggcagtggactatga 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gccccacctctgtaggaagccccagttaacctgtcccttcttccaggcagtggactatga 507
Query: 307 gctgaaccgtgccttcatgctgaccgtaatggtgtccaaccaggcgcccctggccagtgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gctgaaccgtgccttcatgctgaccgtaatggtgtccaaccaggcgcccctggccagtgg 567
Query: 367 gatccagatgtccttccagtccacagcaggggtaaccatctctgtcaccgatgtcaacga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gatccagatgtccttccagtccacagcaggggtaaccatctctgtcaccgatgtcaacga 627
Query: 427 ggccccctacttcccctccaaccacaaactgatccgcctggaagagggtgtgcccgctgg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggccccctacttcccctccaaccacaaactgatccgcctggaagagggtgtgcccgctgg 687
Query: 487 gacagcactcaccactttttctgcagtggaccctgaccggttcatgcagcaagctgtgag 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 688 gacagcactcaccactttttctgcagtggaccctgaccggttcatgcagcaagccgtgag 747
Query: 547 gtgagtcttcagtatagcctggccctgtctggccctcagagcaggatccactcctgtgta 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtgagtcttcagtatagcctggccctgtctggccctcagagcaggatccactcctgtgta 807
Query: 607 ccacacagaagagtcacaacatgcccaaagaagcctgaacac 648
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ccacacagaagagtcacaacatgcccaaagaagcctgaacac 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_d20.g1 MSMg01no135_d20.g1 CHROMAT_FILE:
MSMg01no135_d20.g1 PHD_FILE: MSMg01no135_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:19 2005
(609 letters)
>mm_chr2_179727662_179728670
Length = 1009
Score = 648 bits (335), Expect = 0.0
Identities = 341/343 (99%)
Strand = Plus / Minus
Query: 1 ccatctggccacttagaagagagctgctgcaggaaggctgtttagatgaggcctctactc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccatctggccacttagaagagagctgctgcaggaaggctgtttagatgaggcctctactc 321
Query: 61 agggggaaggcagacacaggcctgattagaccgctggtacaggatcagatcggaactgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agggggaaggcagacacaggcctgattagaccgctggtacaggatcagatcggaactgaa 261
Query: 121 gaaaggagccgtgccttgatggtctgcatctttcaatcggctgctcctgctcagtgactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaaaggagccgtgccttgatggtctgcatctttcaatcggctgctcctgctcagtgactc 201
Query: 181 tttttcttctttgagacagcatctcactatgtagcccaggttgggcttcaacttgctttt 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 200 tttttcttctttgagacagtatctcactatgtagcccaggttgggcttcaactcgctttt 141
Query: 241 agactgggctggccttaaattcacagagatctgcctgtctctggctcctgagtgctggga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 agactgggctggccttaaattcacagagatctgcctgtctctggctcctgagtgctggga 81
Query: 301 ctaaaggtgtgtgccactatggcccgctttcattttttttttt 343
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ctaaaggtgtgtgccactatggcccgctttcattttttttttt 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
