BAC Information

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BAC

Clone NameMSMg01-135E20
Chromosome2 (Build37)
Map Location 129,305,843 - 129,390,336
singlet/doubletdoublet
Overlap geneF830045P16Rik
Upstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135E20.T7 (MSMg01no135_e20.b1)MSMg01-135E20.TJ (MSMg01no135_e20.g1)
ACCAG341797AG341798
length718711
length of high quality
(start - end)		477 (72 - 548)333 (79 - 411)
definitionCHROMAT_FILE: MSMg01no135_e20.b1 PHD_FILE: MSMg01no135_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:24 2005CHROMAT_FILE: MSMg01no135_e20.g1 PHD_FILE: MSMg01no135_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,305,843 - 129,306,319)(129,390,004 - 129,390,336)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAAAATCCGCGGA
ATTCACTCATTCTCCCAATGAGCTCACATTAGCCTAAAGTAATGGTTGTA
CCATTGGCCAATTTGGTGAAGTAATGAGCTTTCATAAGAATAACATGAGT
GTGGATGAGGGGTTACTTACAAAGGACAGTGAGACTACAAAAGCAGCTGC
ATCACTAGAAAGTTCACTTAACGTAGATGATGAGTCCCAAGCCTCTGCAG
CTCTGCAGCTTCTGTGCAGCTTGTGTGCAGCTCTACAGTCCAGGCAAGTT
CCCCAGGCAGTGTCACACTGGTTTACACTGCTGGGTAGGGGCCCTCCTTT
GGCAATACCCTTGGCATGACCTTTGCTTTCCTCCTTTTTACCACCTGTGG
GGAGGGAGTCTCCCTTTCCATCCTGGTGGAAATATTAATTTGTCAGGGAT
GCTGCAATTCTGGGGAACATACCTACTACATGAAGACAAGCCCCTCCCCC
AAAAGCACATTGTCTTAGTCAGGGTTTCTATTCCTGCTCAAACATCATGA
CCAAGAAGCAAATTGGCGTAGGAAAGGGTTTACTCAGTTTACACTTCCAC
ATTGCTGTTCATCACCATAGGAAGTCAGAATCGGAACTCCAGTCAGTCAC
GAAGCTGGAGCTGATACATAGGTCATGGCAGCATGCTTACTAACTGGTTG
TTTTCTTTTACCTTTCAG

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCAATGCTGGGCACAGACT
GCATGAAGTTGGTAGAGAGGAGAGAATGCAGGAACATGGAGATGCCAAGC
CTGAGCCAAGAAAGTTGTTTTGCTATGGAATATATTATTTTTGCAGGTTG
CTATAGTTACCGCTGTGAAATTAAAAATTAAAACCTTGTGAAAGAGAGAG
GGTTGACTGAGATGAGGCAGTTCCTTGACAGGCTGAGTTATTTATCTTTT
CCCCATGTAACATCTGGTTACGTGCTTGCAAATTTATTTTTAATTCAGGG
CTCTAAAAAAGATTTTGCATTGATATGCCATGCAGAAATGAATCACTTGG
GAGAGAAAGATTAGCGGGCAGCATCCAGTGGCAACTGGTGACCTCTGGTG
TGTCCCCTGGNCTTTGCCTCTGCTTCTCAGGCNACCCTCTAGCATCAGGG
TATGACTGGCAAGCATCTGGAACTCCTTGCATCAAGCAGCAGCCGGAACC
CTGGTTCCCAAATACCAAGCCTTGCTGGAGGCTGGATTTGGGTCCGGGGG
ACCCGAACCTGAAAAAGACCAAATTTCCCGGAAAAAAGCTGGGGAAAGCC
CCCCCTTTTTTCCTTTGGGCCCCCAAAGTGGGAAAAACCCTGTTTTCCCA
AAAAACTCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_e20.b1 MSMg01no135_e20.b1 CHROMAT_FILE:
MSMg01no135_e20.b1 PHD_FILE: MSMg01no135_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:24 2005
         (477 letters)



>mm_chr2_129305643_129306519
          Length = 877

 Score =  861 bits (445), Expect = 0.0
 Identities = 469/477 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctcacattagcctaaagtaatggttgtaccattggccaatttggtgaagtaatgagctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 gctcacattagcctaaagtaatggttgtaccattggccaatttggtgaagtagtgagctt 260

                                                                       
Query: 61  tcataagaataacatgagtgtggatgaggggttacttacaaaggacagtgagactacaaa 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 tcataagaataacatgagtgtggatgaggggttacttacaagggacagtgagactacaaa 320

                                                                       
Query: 121 agcagctgcatcactagaaagttcacttaacgtagatgatgagtcccaagcctctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagctgcatcactagaaagttcacttaacgtagatgatgagtcccaagcctctgcagc 380

                                                                       
Query: 181 tctgcagcttctgtgcagcttgtgtgcagctctacagtccaggcaagttccccaggcagt 240
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgctgcttccgtgcagcttgtgtgcagctctacagtccaggcaagttccccaggcagt 440

                                                                       
Query: 241 gtcacactggtttacactgctgggtaggggccctcctttggcaatacccttggcatgacc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcacactggcttacactgctgggtaggggccctcctttggcaatacccttggcatgacc 500

                                                                       
Query: 301 tttgctttcctcctttttaccacctgtggggagggagtctccctttccatcctggtggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgctttcctcctttttaccacctgtggggagggagtctccctttccatcctggtggaa 560

                                                                       
Query: 361 atattaatttgtcagggatgctgcaattctggggaacatacctactacatgaagacaagc 420
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 561 atattaatttgtcagggatgctgcaattctggggaacatacctacaatatgaagacaagc 620

                                                                    
Query: 421 ccctcccccaaaagcacattgtcttagtcagggtttctattcctgctcaaacatcat 477
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 ccctcccccaaaagcacattgtcttagtcagggtttctattcctgcacaaacatcat 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_e20.g1 MSMg01no135_e20.g1 CHROMAT_FILE:
MSMg01no135_e20.g1 PHD_FILE: MSMg01no135_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:24 2005
         (333 letters)



>mm_chr2_129389804_129390536
          Length = 733

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatcaatgctgggcacagactgcatgaagttggtagagaggagagaatgcaggaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tcatcaatgctgggcacagactgcatgaagttggtagagaggagagaatgcaggaacatg 474

                                                                       
Query: 61  gagatgccaagcctgagccaagaaagttgttttgctatggaatatattatttttgcaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 gagatgccaagcctgagccaagaaagttgttttgctatggaatatattatttttgcaggt 414

                                                                       
Query: 121 tgctatagttaccgctgtgaaattaaaaattaaaaccttgtgaaagagagagggttgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgctatagttaccgctgtgaaattaaaaattaaaaccttgtgaaagagagagggttgact 354

                                                                       
Query: 181 gagatgaggcagttccttgacaggctgagttatttatcttttccccatgtaacatctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gagatgaggcagttccttgacaggctgagttatttatcttttccccatgtaacatctggt 294

                                                                       
Query: 241 tacgtgcttgcaaatttatttttaattcagggctctaaaaaagattttgcattgatatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tacgtgcttgcaaatttatttttaattcagggctctaaaaaagattttgcattgatatgc 234

                                            
Query: 301 catgcagaaatgaatcacttgggagagaaagat 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 catgcagaaatgaatcacttgggagagaaagat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 733
Length adjustment: 9
Effective length of query: 324
Effective length of database: 724
Effective search space:   234576
Effective search space used:   234576
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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