Query= MSMg01no135_g21.b1 MSMg01no135_g21.b1 CHROMAT_FILE:
MSMg01no135_g21.b1 PHD_FILE: MSMg01no135_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
(367 letters)
>mm_chr2_141699421_141700185
Length = 765
Score = 658 bits (340), Expect = 0.0
Identities = 356/362 (98%), Gaps = 2/362 (0%)
Strand = Plus / Minus
Query: 6 ggaattcagcactttgcaatgatcaagcaaaactgttatttttgatggtcaattaactag 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggaattcagcactttgaaatgatcaagcaaaactgttatttttgatggtcaattaactag 506
Query: 66 ttattgtctacacagaaaaaaaaaatctgcctatccctttatctcaaataaatgatgatg 125
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ttattgtctacacag--aaaaaaaatctgcctatctctttatctcaaataaatgatgatg 448
Query: 126 tagaattgttggttgtgtttttattacactattgtactttgtattaaaaagtacagccaa 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tagaattgttggttgtgtttttattacactattgtactttgtattaaaaagtacagccaa 388
Query: 186 ctcaatagagagagagagtatcatgtattccagcaaaggcaaaagtactcttcaatgatt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctcaatagagagagagagtatcatgtattccagcaaaggcaaaagtactcttcaatgatt 328
Query: 246 ggttgaggagaactgcagtgctgtggcaagtttattagacgcagtactctatgggccaac 305
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gggtgaggagaactgcagtgctgtggcaagtttattagacgcagtactctatgggccaac 268
Query: 306 acgaagcaaaatagggatgatctacagtttcagagctgagggggggatcttctgccaggg 365
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 267 acgaagcaaaatagggatgatctacagtttcagagctgaggggggaatcttctgccaggg 208
Query: 366 ct 367
||
Sbjct: 207 ct 206
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 765
Length adjustment: 9
Effective length of query: 358
Effective length of database: 756
Effective search space: 270648
Effective search space used: 270648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_g21.g1 MSMg01no135_g21.g1 CHROMAT_FILE:
MSMg01no135_g21.g1 PHD_FILE: MSMg01no135_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:34 2005
(624 letters)
>mm_chr2_141523952_141524973
Length = 1022
Score = 1004 bits (519), Expect = 0.0
Identities = 604/645 (93%), Gaps = 24/645 (3%)
Strand = Plus / Plus
Query: 1 ctcccttgaaacaagcagaagcagagactgttggcacagaggacagtagagaaagattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 ctcccttgaaacaagcagaagcagagactgttggcacagaggacagtagagaaagattga 238
Query: 61 gtaaggcttttctgcaccttaggtgcttgtgagctcacacagttgtctgtgtaggcaatt 120
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 239 gtaaggcttttctgcaccttaggtgcttgtgagcccacacagttgtctgtgtaggcgatt 298
Query: 121 tgcctgttcagtgaggaaggcttggagccaaattacctgtctgctcttggcttctgtact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tgcctgttcagtgaggaaggcttggagccaaattacctgtctgctcttggcttctgtact 358
Query: 181 acatgccatattgcagccattgccagcaccttatccttacttcttgacttgcctgggatt 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acatgccatattgtagccattgccagcaccttatccttacttcttgacttgcctgggatt 418
Query: 241 gtaccacccagatgctgtactggctgaagacttcctgagtcttaggtctagagacatctg 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtaacacccagatgctgtactggctgaagacttcctgagtcttaggtctagagacatctg 478
Query: 301 tggctaacatacatccagcttctcgggtatgggagcatgccaacatttacccttgccgca 360
||||||||||| |||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 479 tggctaacatatttccagcttctcgggtatgggagcatgtgaataattacccttgccgca 538
Query: 361 tctctctcctacacatacatatgcacacacacatactacaacacacacacacacacacac 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tctctctcctacacatacacatgcacacacacatactacaacacacacacacacacacac 598
Query: 421 acacacacacacacacacacacacacaca--c-ata-------------------gttga 458
||||||||||||||||||||||||||||| | ||| |||||
Sbjct: 599 acacacacacacacacacacacacacacatactataacacacacacacacacatcgttga 658
Query: 459 gaaaactgtgctcaccaagttccctctgggaaatcccagaaggaggaagcacaattctta 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaaaactgtgctcaccaagttccctctgggaaatcccagaaggaggaagcacaattctta 718
Query: 519 ttcattcctttactggcttccctttcttccctgacttttcgttatagtgattcttgtcat 578
|||||| ||| |||||||| |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 719 ttcatttctt-actggcttacctttcttccctgatttttctttatagtgattcttgtcat 777
Query: 579 ccctttttcccgaaatcatagacctgctatcttcttttgaaacaa 623
|||||||| | |||||||||||||| |||||||||||||||||||
Sbjct: 778 cccttttttc-gaaatcatagaccttctatcttcttttgaaacaa 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1022
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1012
Effective search space: 621368
Effective search space used: 621368
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
