Query= MSMg01no135_h18.b1 MSMg01no135_h18.b1 CHROMAT_FILE:
MSMg01no135_h18.b1 PHD_FILE: MSMg01no135_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:38 2005
(613 letters)
>mm_chr2_49779593_49780603
Length = 1011
Score = 1102 bits (570), Expect = 0.0
Identities = 602/614 (98%), Gaps = 4/614 (0%)
Strand = Plus / Minus
Query: 1 attctctgtca-cattctccttttgctaattagctgtggtacaaaatggaaattactgaa 59
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 attctctgtcaccattctccttttgctaattagctgtggtacaaaatggaaattactgaa 752
Query: 60 tttcataactttaactttatcagtgttgagtgatttacacaatcctgcagctaggaggtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tttcataactttaactttatcagtgttgagtgatttacacaatcctgcagctaggaggtc 692
Query: 120 ccagagctgcattctttctttggcaaatcggtcgatcttcctgcaaagacagcctctgct 179
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 691 ccagagctgcattctttctttggcaaattggtcgatcttcctgcaaagacagcctctgct 632
Query: 180 catcacatctggtctgagtactgacttcgggctggggataggtagaggacgtccattcct 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 catcacatctggtctgagtactgacttcgggctggggataggtagaggacgtccattcct 572
Query: 240 ttccctgcctcagtacaaaggtttggagtatggaaagaaggcaaggtacacataagatca 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 571 ttccctgcctcagtacaaaggtttggagtaaggaaagaaggcaaggtacacataagatca 512
Query: 300 agccaacctgcccacagcagcacaagggggcttagaggagacatgggtagggtctgctca 359
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 511 agccaacctgcccacagcagcacaagggggcttagaggagacacaggtagggtctgctca 452
Query: 360 cagatccacagggaattgataattctgggtaccagtcagactccagaaccagcctctatt 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagatccatagggaattgataattctgggtaccagtcagactccagaaccagcctctatt 392
Query: 420 ctctaccacgcctggggtatggaactcaaggcccagtaggaaacaggagaaagcagtgac 479
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 391 ctctaccacgcctggggtatggaactcaaggcccagaaggaaacgggagaaagcagtgac 332
Query: 480 cataggtgatgatttcagtgtgggcctatcgccctcctcctggatctctgcctcacagac 539
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 331 cataggtgatgatttcagtgtgggcctatcgc---cctcctggatctctgcctcacagac 275
Query: 540 aggaactggaatgctgtccccaggaaaacacagccccagggcaagacatccataaatcgt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 274 aggaactggaatgctgtccccaggaaaacacagccccagggcaagacatccatagatcgt 215
Query: 600 ctgctcctagagaa 613
||||||||||||||
Sbjct: 214 ctgctcctagagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space: 603603
Effective search space used: 603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_h18.g1 MSMg01no135_h18.g1 CHROMAT_FILE:
MSMg01no135_h18.g1 PHD_FILE: MSMg01no135_h18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:38 2005
(504 letters)
>mm_chr2_49629774_49630677
Length = 904
Score = 967 bits (500), Expect = 0.0
Identities = 503/504 (99%)
Strand = Plus / Plus
Query: 1 tatctgtctagtttgtaaagtgtcatgtgtactgcagatgtctgttctctgggctttatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatctgtctagtttgtaaagtgtcatgtgtactgcagatgtctgttctctgggctttatg 260
Query: 61 ttctgtacagtagatttcattaagaaaaattgtggacaaacttgtttctgtggtttgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgtacagtagatttcattaagaaaaattgtggacaaacttgtttctgtggtttgatg 320
Query: 121 ggggagaatggcgatgtgtatttaaatagctatcctgtgagatagaaatgtccccaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggagaatggcgatgtgtatttaaatagctatcctgtgagatagaaatgtccccaaaga 380
Query: 181 tctggaagtaaccctccctggccctcggaaaactctggctatctcctaggttctaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctggaagtaaccctccctggccctcggaaaactctggctatctcctaggttctaaaatg 440
Query: 241 aagatgtatggatactctggcagactgcatgttgtataatttgaaaatactcaaaactgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagatgtatggatactctggcagactgcatgttgtataatttgaaaatactcaaaactgg 500
Query: 301 acaataaaactgagttaaactttgactggtctggtgtccttatttgagccccagcaaggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 acaataaaactgagttaaactttgactggtctggtgtccttatttgagccccagcagggt 560
Query: 361 atcttgacaagaagtcaggaagtgtgtgttggaatgaagcatgttttgaaagaagtcact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcttgacaagaagtcaggaagtgtgtgttggaatgaagcatgttttgaaagaagtcact 620
Query: 421 ccaacatgaaccacctaagtcaaagctttgttcttttttgttgctggctttttgttgttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaacatgaaccacctaagtcaaagctttgttcttttttgttgctggctttttgttgttg 680
Query: 481 aggtttttttatttcccctctagg 504
||||||||||||||||||||||||
Sbjct: 681 aggtttttttatttcccctctagg 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space: 441636
Effective search space used: 441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
