Query= MSMg01no135_i18.b1 MSMg01no135_i18.b1 CHROMAT_FILE:
MSMg01no135_i18.b1 PHD_FILE: MSMg01no135_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:42 2005
(244 letters)
>mm_chr2_142209207_142209850
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 cactgggtatggcagccagtagccaacatgagatagaaaagcaaacaacacgtgtgcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cactgggtatggcagccagtagccaacatgagatagaaaagcaaacaacacgtgtgcctt 385
Query: 61 ttacttgattgtgttccttctatgtaagcatttacataaacacagaatgtataattactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttacttgattgtgttccttctatgtaagcatttacataaacacagaatgtataattactg 325
Query: 121 cctttctccaaaagtggcccaaagcagtcactctggaaatttccaaaggtccgcaagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 cctttctccaaaagtggcccaaagcagtcactctggaaatttccaaaggtcagcaagttt 265
Query: 181 aatgagatttttagtatccaagcccatactgtacgctaagaaaataaagaaagaaatggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgagatttttagtatccaagcccatactgtacgctaagaaaataaagaaagaaatggg 205
Query: 241 cagt 244
||||
Sbjct: 204 cagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no135_i18.g1 MSMg01no135_i18.g1 CHROMAT_FILE:
MSMg01no135_i18.g1 PHD_FILE: MSMg01no135_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:42 2005
(453 letters)
>mm_chr2_142068807_142069659
Length = 853
Score = 847 bits (438), Expect = 0.0
Identities = 452/462 (97%), Gaps = 9/462 (1%)
Strand = Plus / Plus
Query: 1 agagacaagcactgatcccaggatgctccaggagggagagagtgcattgagattggggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagacaagcactgatcccaggatgctccaggagggagagagtgcattgagattggggaa 260
Query: 61 ggaaaggaatacaaaataggtgcaaagaccttgtggggacagctggctcccagtcctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaaggaatacaaaataggtgcaaagaccttgtggggacagctggctcccagtcctctg 320
Query: 121 gtagacactggaacaaaacatgcacgcatcttcaaggtgcatgcatgcttggctatggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtagacactggaacaaaacatgcacgcatcttcaaggtgcatgcatgcttggctatggtt 380
Query: 181 cttcactgaactactgctatcccatagactaggctgcctataggtattgaattgctacca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcactgaactactactatcccatagactaggctgcctataggtattgaattgctacca 440
Query: 241 taccccagttcaagatcggcaagaagacgaggttcccttagagttcagggacaaaacaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taccccagttcaagatcggcaagaagacgaggttcccttagagttcagggacaaaacaga 500
Query: 301 acaaaacctcctgcctcactttcatagcgagaagtcactggtgtccacagaaattagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaaaacctcctgcctcactttcatagcgagaagtcactggtgtccacagaaattagaag 560
Query: 361 agagaaa---------gacagcttgagagacaatacccatctggactctcagctctgtgc 411
||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagaaacaagggaaagacagcttgagagacaatacccatctggactctcagctctgtgc 620
Query: 412 tcctcccctcaccagctgtaattcaagcaattctaaaagctg 453
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctcccctcaccagctgtaattcaagcaattctaaaagctg 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
