Query= MSMg01no135_l07.b1 MSMg01no135_l07.b1 CHROMAT_FILE:
MSMg01no135_l07.b1 PHD_FILE: MSMg01no135_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:53 2005
(671 letters)
>mm_chr2_171970953_171972023
Length = 1071
Score = 1220 bits (631), Expect = 0.0
Identities = 658/667 (98%)
Strand = Plus / Plus
Query: 5 gaattcatgttgtaacaatgctacaagagagatgacttaaaaccaaatagaaagatatcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgttgtaaaaatgctacaagagagatgacttaaaaccaaatagaaagatatcc 264
Query: 65 tctcacagttgagaaagccagaagccacggtgtaccagggccttgctctccctgaagatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctcacagttgagaaagccagaagccacggtgtaccagggccttgctctccctgaagatg 324
Query: 125 atagaaacatccatgatcctgtcagtttctgggaactgccgactgtccttggtttgtgct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagaaacatccatgatcctgtcagtttctgggaactgccgactgtccttggtttgtgct 384
Query: 185 tcccactgctctcatccctgcattatcatggccttcttcatcatgcctcttctatccacc 244
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 tcccactgctttcatccctgcattatcatggccttcttcatcatgcctcttctatccatc 444
Query: 245 catcttcctgtgacattcttctcctgtatgtctcaaaatatctttcactgtataagagca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catcttcctgtgacattcttctcctgtatgtctcaaaatatctttcactgtataagagca 504
Query: 305 tctctaatccaaatacctccaccttagccccacaaccatccagagtctctctcctaataa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctaatccaaatacctccaccttagccccacaaccatccagagtctctctcctaataa 564
Query: 365 ggctatatccccaagtgccaggaatcataactcgtttgtctgaggaaacacaactcaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggctatatccccaagtgccaggaatcataactcgtttgtctgaggaaacacaactcaact 624
Query: 425 cacaacatgatgacatgcttggttttgtagcagagaagaaagataggctgagaacacaac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cacaacatgatgacatgcttggttttgtagcagagaagaaagataggctgagaacacaac 684
Query: 485 atgaaggcttgtgggagaagggagagcagccgagggcagctgagctgccatagccacacc 544
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 685 atgagggcttgtgggagaagggagagcagccaagggcagctgagctgccatagccaaacc 744
Query: 545 caggacaagtgtagcaaaataaatagtgacagctatggactgtaacccaaagaataaaca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 caggacaagtgtagcaaaataaatagtgacagctatggactgtaacccaaagaataaaca 804
Query: 605 tccatgtgctaacacatttctgttagtaacttaagacagagggtggaggttggaaaacgt 664
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 805 cccatgcgctaacacatttctgttagtaacttaagacagagggtggaggttggaaaatgt 864
Query: 665 cattagt 671
|||||||
Sbjct: 865 cattagt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space: 701321
Effective search space used: 701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_l07.g1 MSMg01no135_l07.g1 CHROMAT_FILE:
MSMg01no135_l07.g1 PHD_FILE: MSMg01no135_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:53 2005
(545 letters)
>mm_chr2_172116761_172117705
Length = 945
Score = 953 bits (493), Expect = 0.0
Identities = 532/545 (97%), Gaps = 2/545 (0%)
Strand = Plus / Minus
Query: 1 tctgttcataggccccagggctgtgtatatcctcctaatgggccagctctagcaggtcac 60
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 544 tctgttcacaggccccagggctgtgtatatcctcctactgggccagctctagcaggtcac 485
Query: 61 cttccctgactgtctctagcagtcggaggagtggccagggtccttcaaggttgtggggca 120
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 484 cttccctgactgtctctatcagtcagaggagtggccagggtccttcaaggttgtggggca 425
Query: 121 gggcgtagagaaagaaagaagaggacaaggtgagtatgttgtcagtggagccagggagaa 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 gggcgtagagaaagaaagaagaggacaaggtgagtttgttgtcagtggagccagggagaa 365
Query: 181 gggcaatatgtgggcagaagtttccaagctagggcagaaaggtaaagagaaccatcatgg 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 364 gggcaatatgtgggcagaagtttccaagctagggcagaaaggtaaggagaaccatcatgg 305
Query: 241 tgtgtgctggggtcttcatggctgtctggacatcgagggtagggtagaca-ttcatctca 299
| |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 304 tatgtgctgggggcttcatggctgtctggacatcgagggtagggtaga-agttcatctca 246
Query: 300 gcctgaggatgagacatttcccctttaattatgtttaattagctagagagagggtctcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gcctgaggatgagacatttcccctttaattatgtttaattagctagagagagggtctcat 186
Query: 360 gtgataatccaggttggcctggaagtcactatgtagttgaagatgaccttgaacttccga 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 185 gtgataatccaggttggcctggaagtcactatgtagttgaatatgaccttgaacttccga 126
Query: 420 ttctcttgcctccccttcctcatgctgggattatgggcacaccccgtcatgcccgggctg 479
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 125 ttctcttgcctccccttcctcatgatgggattatgggcataccccgtcatgcccgggctg 66
Query: 480 tgtgacatcagggatggaacccagggcttccaagctgccaggcaagctctctgataactg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 tgtgacatcagggatggaacccagggcttccaagctgccaggcaagctctctgataactg 6
Query: 540 agcta 544
|||||
Sbjct: 5 agcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
