CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAACGAAACCACAGGATTTACAGGATGGATATGATAACAGGACAC
TTTTGCTGCATATGAGAAACATACCTCAATAGCAAAGACAAACATTACGT
CAAGGGTAAAGGTTTGGAAAAAGTTCACTAAAACTTCACTGAAGTAAAAA
CTTTTTTTCCCACTGATCATAACAAACAGCTTTGCTTCAATAACCCCATA
TCTGTAAGCACTAGTTGTCTTCTTATGTTTCTAATTCTAATGATTAATGC
TAATTTAGCTCCAACAATCTTTAATACATATGTCCAATGTTTTAATAATA
AAGTATTTAACAATTCTGTATGTACTCTAAAATTCAATTGTGTATAATGT
CTATTTTAGATGGTAATCTAGCCAAATTTGATTTGATAACTAATAATATG
AAGAGATATTTAAATTAATTTATCATAAACAAGACATATTTCAATGTAAA
TGCTCAAACTATAAGAAATTCAAACATGAAAGAATAATCAGATATTGTCA
TATGTACAGAGAATTGTGAGTGTGAGATACATTGAATGTTAAATACAGGA
ACACTGCTGCTTCCAGCAGTAGGTTTTCAAAACCCTCAGGGATCCTCAGA
ATTTCCAACAGAAAGTAAAGGAAATTTATTTCAGGAGTTATGAAAAGTGT
AAATTACAAAAAGTTATATTGAACN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATT
TGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTA
GTCCCCTATCCGATTTGGGATAGGTAAAGATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGAAATGGATACAAAAAATGTGGT
ACATTTACACAATGGAATACTACTCAGCTATTAAAAAAATTTATTTACGA
AATTCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTA
ACCCAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTGGGATACCCAAGATATAAGATACAACTTGCCAAAC
GCATGAAATTCAAGAAGAATGAAGACCAAAGTGTGGACACTTTACCCTTT
CTTAGAAATGGGAACAAAACACCCATAGAAGGAGTTACAGAGACAAAATT
TGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGCAGGGA
TCCATCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCA
AGATTTTGCTGAAAGGACCCAGATATAGCTCTCTCTTGTGAGACTATGCC
GGGGCCTAGCAAACACAGAAGTGGATGATCACG

Query= MSMg01no135_n21.b1 MSMg01no135_n21.b1 CHROMAT_FILE:
MSMg01no135_n21.b1 PHD_FILE: MSMg01no135_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:05 2005
         (613 letters)



>mm_chr2_40836450_40837462
          Length = 1013

 Score = 1120 bits (579), Expect = 0.0
 Identities = 603/611 (98%), Gaps = 1/611 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaacgaaaccac-aggatttacaggatggatatgataacaggacacttttgc 62
           ||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||
Sbjct: 939 ggaattctcaacgaaaagacaaggatttacaggatggatatgataacaggacacttttgc 880

                                                                       
Query: 63  tgcatatgagaaacatacctcaatagcaaagacaaacattacgtcaagggtaaaggtttg 122
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 879 tgcatatgagaaacatacctcaacagcaaagataaacattacgtcaagggtaaaggtttg 820

                                                                       
Query: 123 gaaaaagttcactaaaacttcactgaagtaaaaactttttttcccactgatcataacaaa 182
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 819 gaaaaagttcactaaaacttcactgaagtaaaaactttttttcccattgatcataacaaa 760

                                                                       
Query: 183 cagctttgcttcaataaccccatatctgtaagcactagttgtcttcttatgtttctaatt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 cagctttgcttcaataaccccatatctgtaagcactagttgtcttcttatgtttctaatt 700

                                                                       
Query: 243 ctaatgattaatgctaatttagctccaacaatctttaatacatatgtccaatgttttaat 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctaatgattaatgctaatttagctccaacaatctttaatacatatgtccaatgttttaat 640

                                                                       
Query: 303 aataaagtatttaacaattctgtatgtactctaaaattcaattgtgtataatgtctattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aataaagtatttaacaattctgtatgtactctaaaattcaattgtgtataatgtctattt 580

                                                                       
Query: 363 tagatggtaatctagccaaatttgatttgataactaataatatgaagagatatttaaatt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tagatggtaatctagccaaatttgatttgataactaataatatgaagagatatttaaatt 520

                                                                       
Query: 423 aatttatcataaacaagacatatttcaatgtaaatgctcaaactataagaaattcaaaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aatttatcataaacaagacatatttcaatgtaaatgctcaaactataagaaattcaaaca 460

                                                                       
Query: 483 tgaaagaataatcagatattgtcatatgtacagagaattgtgagtgtgagatacattgaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tgaaagaataatcagatattgtcatatgtacagagaattgtgagtgtgagatacattgaa 400

                                                                       
Query: 543 tgttaaatacaggaacactgctgcttccagcagtaggttttcaaaaccctcagggatcct 602
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 399 tgttaaatacaggcacactgctgcttccagcagtaggttttcaaaaccctcaggggtcct 340

                      
Query: 603 cagaatttcca 613
           |||||||||||
Sbjct: 339 cagaatttcca 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)