BAC Information

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BAC

Clone NameMSMg01-136D05
Chromosome2 (Build37)
Map Location 63,981,626 - 64,163,335
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnh7, EG667257, Fign
Downstream geneLOC620544, LOC667291, Grb14, Cobll1, LOC383705, 9330158F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136D05.T7 (MSMg01no136_d05.b1)MSMg01-136D05.TJ (MSMg01no136_d05.g1)
ACCAG342466AG342467
length704707
length of high quality
(start - end)		658 (47 - 704)619 (89 - 707)
definitionCHROMAT_FILE: MSMg01no136_d05.b1 PHD_FILE: MSMg01no136_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:30 2005CHROMAT_FILE: MSMg01no136_d05.g1 PHD_FILE: MSMg01no136_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:52:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,162,683 - 64,163,335)(63,981,626 - 63,982,244)
sequence
CCCCCNCCTCTATAATTGCGGCGCTAAACGACTCCTATCGAAGAGATCCG
CGGAATTCATGCTACCTGTAGACAAAGTTTAGCTGCTTAGGGATTCTAAG
AGATTCTGAGCCTGCGATGCACTGAGGAAAATTCATGTACATTTTATCTC
TTGGAATTGTTTTTACCCTAAAATTTATTTAAAGCCATGTTGGTCATTGA
AAATAGTGCAACTAAATGTAATAGTTGGTCTCTTGGTGAATAGTTCGCAT
AAATTGAAAAACTAAAATGGCTTAATGTAGCTTTGATACATTGTACAGAC
ACAGGAGACAGTTATCGTGCTTAAATCATGGGAGTTTAATGGTCTTTTCA
TATACTAGCTGTGCTCTCCAGTGGTGAGGGATGCCTTTGTCTTAGTGTAG
AAATGGATAAAAATAAACATGATTTAGCAGCTATGATGACATGACTTACT
TAAAGTCTTTTTACCTGTTTGCAATAGTCATGAAATTCAATGAGGTGAAC
TTTCATGGCTCAGAGTTCATTAACCTTCAAATACAAAATAAATAATGTAC
ACTGGGGACAATTTACTGTAATACAATTTTTCCTCTTCTCATGCTATGCC
CCCATATACATGGATATAATTTTTTTAAAGAAAGGACTACACTGTTATAT
TGCTGTAATACTTGTAGAAATTGACACATTATTTGTTAGCCAACTCTTGA
CAAA

CTCCNNCCTTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGATGACTACCAT
CAATAATGATAATCTTTTCTGGGAATAGCTAAAATTTGCTAAGTGTAGAC
TGAAGTATTCCCATTGCTAAACACAAAATGATAATTGGATTGCTAATTAA
AGATTGGGGAATCTTTTAGTACTGGATAAATAAACCAAAACATTGCTTTG
GATGAGTTGATTTTTACTTTTTGAATGCTAGTAAAACAGGAAAATACTGA
CAATATTTGGAAAGATGGAAAGACATTGATACATATGCAGGACAAGTGCA
TTCATGAGGGAGTAACTGCTATTGTCACACAGATATGCTTAATACTATCT
GCATAAATCTTTGCATTTATTTGGTCTTTCTTGAAGCTAATCTCAATCTA
AATAAGAGTAAACCCATGTAAGTATCTATGAGTTAAATTAACACTAAGTC
TTACACATTCTTCCAACTGCTGAAAATCCTGAAAATTCTTTTCATTGAAT
CTCTCATTCATATTTTCACCCATCTGATAGTTTTGTGTAGTCTAGTACTG
TAGATTGGAGGAGAGGTATTTCAAATGTTAAAGAAAATAAAATATTTTGT
CTTCATGTGATATATGTCACTATGTGAGCACAAAGTATTTTCTATAAAGA
ACTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_d05.b1 MSMg01no136_d05.b1 CHROMAT_FILE:
MSMg01no136_d05.b1 PHD_FILE: MSMg01no136_d05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:30 2005
         (658 letters)



>mm_chr2_64162478_64163535
          Length = 1058

 Score = 1247 bits (645), Expect = 0.0
 Identities = 651/653 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcatgctacctgtagacaaagtttagctgcttagggattctaagagattctgagc 65
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ggaattcatgctagctgtagacaaagtttagctgcttagggattctaagagattctgagc 799

                                                                       
Query: 66  ctgcgatgcactgaggaaaattcatgtacattttatctcttggaattgtttttaccctaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ctgcgatgcactgaggaaaattcatgtacattttatctcttggaattgtttttaccctaa 739

                                                                       
Query: 126 aatttatttaaagccatgttggtcattgaaaatagtgcaactaaatgtaatagttggtct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aatttatttaaagccatgttggtcattgaaaatagtgcaactaaatgtaatagttggtct 679

                                                                       
Query: 186 cttggtgaatagttcgcataaattgaaaaactaaaatggcttaatgtagctttgatacat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttggtgaatagttcgcataaattgaaaaactaaaatggcttaatgtagctttgatacat 619

                                                                       
Query: 246 tgtacagacacaggagacagttatcgtgcttaaatcatgggagtttaatggtcttttcat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tgtacagacacaggagacagttatcgtgcttaaatcatgggagtttaatggtcttttcat 559

                                                                       
Query: 306 atactagctgtgctctccagtggtgagggatgcctttgtcttagtgtagaaatggataaa 365
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atattagctgtgctctccagtggtgagggatgcctttgtcttagtgtagaaatggataaa 499

                                                                       
Query: 366 aataaacatgatttagcagctatgatgacatgacttacttaaagtctttttacctgtttg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aataaacatgatttagcagctatgatgacatgacttacttaaagtctttttacctgtttg 439

                                                                       
Query: 426 caatagtcatgaaattcaatgaggtgaactttcatggctcagagttcattaaccttcaaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caatagtcatgaaattcaatgaggtgaactttcatggctcagagttcattaaccttcaaa 379

                                                                       
Query: 486 tacaaaataaataatgtacactggggacaatttactgtaatacaatttttcctcttctca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacaaaataaataatgtacactggggacaatttactgtaatacaatttttcctcttctca 319

                                                                       
Query: 546 tgctatgcccccatatacatggatataatttttttaaagaaaggactacactgttatatt 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgctatgcccccatatacatggatataatttttttaaagaaaggactacactgttatatt 259

                                                                
Query: 606 gctgtaatacttgtagaaattgacacattatttgttagccaactcttgacaaa 658
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gctgtaatacttgtagaaattgacacattatttgttagccaactcttgacaaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no136_d05.g1 MSMg01no136_d05.g1 CHROMAT_FILE:
MSMg01no136_d05.g1 PHD_FILE: MSMg01no136_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:30 2005
         (619 letters)



>mm_chr2_63981426_63982444
          Length = 1019

 Score = 1181 bits (611), Expect = 0.0
 Identities = 617/619 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgactaccatcaataatgataatcttttctgggaatagctaaaatttgctaagtgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatgactaccatcaataatgataatcttttctgggaatagctaaaatttgctaagtgtag 260

                                                                       
Query: 61  actgaagtattcccattgctaaacacaaaatgataattggattgctaattaaagattggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgaagtattcccattgctaaacacaaaatgataattggattgctaattaaagattggg 320

                                                                       
Query: 121 gaatcttttagtactggataaataaaccaaaacattgctttggatgagttgatttttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcttttagtactggataaataaaccaaaacattgctttggatgagttgatttttact 380

                                                                       
Query: 181 ttttgaatgctagtaaaacaggaaaatactgacaatatttggaaagatggaaagacattg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 ttttgaatgctagtaaaacaggaaaatagtgacaatatttggaaagatggaaagacattg 440

                                                                       
Query: 241 atacatatgcaggacaagtgcattcatgagggagtaactgctattgtcacacagatatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atacatatgcaggacaagtgcattcatgagggagtaactgctattgtcacacagatatgc 500

                                                                       
Query: 301 ttaatactatctgcataaatctttgcatttatttggtctttcttgaagctaatctcaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaatactatctgcataaatctttgcatttatttggtctttcttgaagctaatctcaatc 560

                                                                       
Query: 361 taaataagagtaaacccatgtaagtatctatgagttaaattaacactaagtcttacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaataagagtaaacccatgtaagtatctatgagttaaattaacactaagtcttacacat 620

                                                                       
Query: 421 tcttccaactgctgaaaatcctgaaaattcttttcattgaatctctcattcatattttca 480
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttccaactgctgaaaaacctgaaaattcttttcattgaatctctcattcatattttca 680

                                                                       
Query: 481 cccatctgatagttttgtgtagtctagtactgtagattggaggagaggtatttcaaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccatctgatagttttgtgtagtctagtactgtagattggaggagaggtatttcaaatgt 740

                                                                       
Query: 541 taaagaaaataaaatattttgtcttcatgtgatatatgtcactatgtgagcacaaagtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaagaaaataaaatattttgtcttcatgtgatatatgtcactatgtgagcacaaagtat 800

                              
Query: 601 tttctataaagaacttcac 619
           |||||||||||||||||||
Sbjct: 801 tttctataaagaacttcac 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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