Query= MSMg01no136_j06.b1 MSMg01no136_j06.b1 CHROMAT_FILE:
MSMg01no136_j06.b1 PHD_FILE: MSMg01no136_j06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:00 2005
(608 letters)
>mm_chr2_46400011_46401018
Length = 1008
Score = 1054 bits (545), Expect = 0.0
Identities = 590/605 (97%), Gaps = 1/605 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtaagaagcttacctattcagtaacattcaaatttacttctagtagagatgg 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcagtaagaaggttacctattcagtaacattcaaatttacttctagtagagatgg 264
Query: 64 tgaaactaattaggcattacaaagaacgaagctggaatagctcagggctagaggtgggtt 123
|||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||
Sbjct: 265 tgaaactaattaggcattacaaagaatgaagctggaatagctaaggtctagaggtgagtt 324
Query: 124 taccatgagagagttagggaattcccctgagacaggttttttcactagaacccctggtgg 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taccatgagagtgttagggaattcccctgagacaggttttttcactagaacccctggtgg 384
Query: 184 tgggtttaacaatagactgcattacacctggctcccttcttagtagcagtggcctggtcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggtttaacaatagactgcattacacctggctcccttcttagtagcagtggcctggtcc 444
Query: 244 ccaccttcttttgatttatacattccttatgttttgtgtcactgtaactcagaggatgta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccaccttcttttgatttatacattccttatgttttgtgtcactgtaactcagaggatgta 504
Query: 304 tctctcctggttttttgttattcttctgtataaaaagttcaatgctctacttgaaaaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tctctcctggttttttgttattcttctgtataaaaagttcaatgctctacttgaaaaatt 564
Query: 364 acattcatattctacacaatctcctgtgttgtatctgtctgtcatttgccgactccttgt 423
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 565 acattcatattctacacaatctcctgtgttgcatctgtctgtcatttgccgactccttgt 624
Query: 424 ccacctgtaaccagagacctgtccttcgcagacaagggaacaagagggtctgcggcacaa 483
|||||||||||||||||||| | || | ||||||||||||||||| ||||||| |||||
Sbjct: 625 ccacctgtaaccagagacctcttctacacagacaagggaacaagaaggtctgca-cacaa 683
Query: 484 tactttagggatctgaaagcaaatttgccttatttgtagaaagaaaatttgttatttagt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tactttagggatctgaaagcaaatttgccttatttgtagaaagaaaatttgttatttagt 743
Query: 544 actggtaacctttgacactaggagttttaggttacttgtgaacaagaactaccatcctag 603
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 744 actggtaacctttgacactaggagttttaggttacttgtgaacaagaaccaccatcctag 803
Query: 604 attcc 608
|||||
Sbjct: 804 attcc 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space: 596804
Effective search space used: 596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_j06.g1 MSMg01no136_j06.g1 CHROMAT_FILE:
MSMg01no136_j06.g1 PHD_FILE: MSMg01no136_j06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:01 2005
(637 letters)
>mm_chr2_46479655_46480691
Length = 1037
Score = 1170 bits (605), Expect = 0.0
Identities = 629/637 (98%)
Strand = Plus / Minus
Query: 1 tatatattttactcatacaaatattcatatatttgtatatgacatgaaagtagaagtgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tatatattttactcatacaaatattcatatatttgtatatgacatgaaagtagaagtgat 778
Query: 61 acttttaatttaatgaaaggaaaagataacaaagaaggagagtggagggagtgaaaagca 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 777 acttttaatttaatgaaaggaaaagataacaaaaaaggagagtggagggagtgaaaagca 718
Query: 121 tagtgaaagtacatccatgtgcttgtggaaatgtccttagcaagtctgacaacaattaca 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 tagtgatagtacatccatgtgcttgtggaaatgtccttagcaagtctgacaacaattaca 658
Query: 181 acaaatatagtctggcaaaataaataaaaggaaagaaaactggtacaattttttaaaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 acaaatatagtctggcaaaataaataaaaggaaagaaaactggtacaattttttaaaaaa 598
Query: 241 gcctttgtctgccaaaaggttcaacaaatccggcatcttcatagaaatatcagttggaat 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 597 gcctttgtctgccaaaaggttcaacaaatccggcatcttcatagaaatgtcagttggaat 538
Query: 301 acgtagaatgtcgtagaggttcaaagggacaaagggtagtgtggaaaggcagcaggtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acgtagaatgtcgtagaggttcaaagggacaaagggtagtgtggaaaggcagcaggtgaa 478
Query: 361 tgaccgtctccaagtagacttggaagaaagtcatcaaatgagccttgatcttgggctttc 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgaccgtctccaagtagactttgaagaaagtcatcaaatgagccttgatcttgggctttc 418
Query: 421 tgattccagaaaggcagaggagtaactccatgtcaacatttccaatgaattcaactttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgattccagaaaggcagaggagtaactccatgtcaacatttccaatgaattcaactttga 358
Query: 481 cgaaataaaaaatagaaacaaataaggataatgattcttgggggagtcagctagtccaga 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tgaaataaaaaatagaaacaaataaggataatgattcttgggggagtcagctagtccaga 298
Query: 541 aacatcacaaagtaatattgaaactactcagcacgtcaaagtaccatcttgactttagaa 600
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 297 aacatcacaaagtaatattgaaactactcagcacttcaaagtactatcttgactttagaa 238
Query: 601 aactcaaattacagagatgtgatttcctgttttttca 637
|||||| ||||||||||||||||||||||||||||||
Sbjct: 237 aactcacattacagagatgtgatttcctgttttttca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
