Query= MSMg01no136_j08.b1 MSMg01no136_j08.b1 CHROMAT_FILE:
MSMg01no136_j08.b1 PHD_FILE: MSMg01no136_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:01 2005
(648 letters)
>mm_chr2_85406598_85407645
Length = 1048
Score = 1038 bits (537), Expect = 0.0
Identities = 616/643 (95%), Gaps = 6/643 (0%)
Strand = Plus / Minus
Query: 8 gaattctcagctcctcc-gcaccctaacgataatggactgagcctgtgagcatgaaagca 66
||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 955 gaattctcagctcctccagcaccataacgataatggactgagcctgtgagcctgaaagca 896
Query: 67 agccccagttaaatgttgttctttataagaattgctgtggtcatggtgtctcttcacagg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 agccccagttaaatgttgttctttataagaattgctgtggtcatggtgtctcttcacagg 836
Query: 127 agtaaaaccctaactaagacacacacacacacacacacacacacacacacacacacacac 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agtaaaaccctaactaagacacacacacacacacacacacacacacacacacacacacac 776
Query: 187 acacaaacacacacacacagagagagagagacacacacacacacacacacaaacacacac 246
||||| ||| | | | | ||||||||||||| ||| ||| ||| ||| ||| ||| ||||
Sbjct: 775 acacacacagagagagagagagagagagagagacagacagacagacagacagacagacac 716
Query: 247 acacacagacacacacacacacacacacacaaacacttggtggtatttaagacacaattc 306
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acacac--acacacacacacacacacacacaaacacttggtggtatttaagacacaattc 658
Query: 307 aaaagaaacattataaacatgcctaaagagtacaaatagcttaggcaagaagtggactta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 aaaagaaacattataaacatgcctaaagagtacaaatagcttaggcaagaagtggactta 598
Query: 367 taagaaacaaataaactgattaaagtcaaataaaacacat-aaaaaccctaaatgaagta 425
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 597 taagaaagaaataaactgattaaagtcaaataaaacacataaaaaaccctaaatgaagta 538
Query: 426 aagaagactatttagggtataactggaaatcaaaataaaaagaaaaaaattactaaagat 485
|||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||
Sbjct: 537 aagaagactatttaggatataactggaaatcaaaataaagag-aaaaaattactaaagat 479
Query: 486 tgttttcatttcctagctactgtgaatggaacagcaatgaccatagctgagcaaatagct 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgttttcatttcctagctactgtgaatggaacagcaatgaccatagctgagcaaatagct 419
Query: 546 gttgagttagatgctgagtcctttgggtatccttcacgagtggcacatctgggccatatg 605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 418 gttgagttagatgctgagtcctttgggtatccttcacgagtggcacatct-ggccatatg 360
Query: 606 gtgggtttttctttggaatatttcttagccagttttctcttca 648
|| |||||||||||||||||| |||||| ||||||||||||||
Sbjct: 359 gttggtttttctttggaatatatcttagtcagttttctcttca 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 153
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_j08.g1 MSMg01no136_j08.g1 CHROMAT_FILE:
MSMg01no136_j08.g1 PHD_FILE: MSMg01no136_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:01 2005
(626 letters)
>mm_chr2_85606220_85607245
Length = 1026
Score = 1164 bits (602), Expect = 0.0
Identities = 621/628 (98%), Gaps = 4/628 (0%)
Strand = Plus / Minus
Query: 1 aataaatgcatataattatttgcatatttgagcatatatttgtgtgggcatcttcattta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aataaatgcatataattatttgcatatttgagcatatatttgtgtgggcatcttcattta 767
Query: 61 tacatggagatatttgaaaatttataaactcatgtccttaggaatacctacaacaggaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 766 tacatggagatatttgaaaatttataaactcatgtccttaggaatacctacaacaggata 707
Query: 121 tagataagcaaattcttccaaatcaatggccatttttttaatcttgttctatgtcccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tagataagcaaattcttccaaatcaatggccatttttttaatcttgttctatgtcccaag 647
Query: 181 agatttagaaatgagagtgttaactgctaggtgttgtgtcactctgttttcttgctcatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 agatttagaaatgagagtgttaactgctaggtgttgtgtcactctgttttcttgctcatc 587
Query: 241 ctctcttcccctctctccttcttcctagttccagaaacattattgtcttttaatcagaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 ctctcttcccctctctccttcttcctagttccagaaacattattgtcttttaatcagaac 527
Query: 301 aactgcatggctacagtacttatatatcttacccaaacctttataatttgaaaaagtttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 526 aactgcatggctacagtacttatatatcttacccaaacctttataatttgaaaaag-ctt 468
Query: 361 ctag--tttttttttccattatgaaaacatccacccacccatcttactctttctggaaat 418
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ctagtttttttttttcctttatgaaaacatccacccacccatcttactctttctggaaat 408
Query: 419 atcaatccattcgtgctattttttttaagcattaacccttctttattataaacaatttcc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atcaatccattcgtgctattttttttaagcattaacccttctttattataaacaatttcc 348
Query: 479 atctttccatctgtataatatttttttttatttcttaataccatgagacatagtagtatt 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 347 atctttccatctgtataata-ttttttttatttcttaataccatgagacatagtagtatt 289
Query: 539 aaatgaatttacaatctattgtgagaattctctcccttgtggaaggaggactaaggagtg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aaatgaatttacaatctattgtgagaattctctcccttgtggaaggaggactaaggagtg 229
Query: 599 tctatccactcttcatgtgatcccaatg 626
||||||||||||||||||||||||||||
Sbjct: 228 tctatccactcttcatgtgatcccaatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
