Query= MSMg01no136_l20.b1 MSMg01no136_l20.b1 CHROMAT_FILE:
MSMg01no136_l20.b1 PHD_FILE: MSMg01no136_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:13 2005
(663 letters)
>mm_chr2_102699989_102701051
Length = 1063
Score = 1214 bits (628), Expect = 0.0
Identities = 651/662 (98%), Gaps = 7/662 (1%)
Strand = Plus / Minus
Query: 6 gaattctatga----tcccaaatttccagtcatctgaaaataattaaaaccataaatgtc 61
||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gaattctatgaactgt---aaatttccagtcatctgaaaataattaaaaccataaatgtc 823
Query: 62 aaagttttaaatgccaacaatcaaacgtcttagtttgcaaactgtatcttctgttcccct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 aaagttttaaatgccaacaatcaaacgtcttagtttgcaaactgtatcttctgttcccct 763
Query: 122 gaagggttgaaactatgtggccagaatggaaaagctttgagatgaacttgtcacatcctc 181
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaagggttgaaactatgtggctagaatggaaaagctttgagatgaacttgtcacatcctc 703
Query: 182 caggactgaaatttttccttaaaaatggaaggaagatgttaaatagattggaaactggct 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 caggactgaaatttttccttaaaaatggaaggaagatgttaaatagattggaaactggct 643
Query: 242 taagactttatctccatgaaaccatagatagtataatatggtggtaggatataaaaactg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 taagactttatctccatgaaaccatagatagtataatatggtggtaggatataaaaactg 583
Query: 302 tgtgggcttttaaggtaacatgggacatcaagggcactgggagagattacatcagtgtct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgtgggcttttaaggtaacatgggacatcaagggcactgggagagattacatcagtgtct 523
Query: 362 tcaggctgtgtcagtgtcacccactcctcatttcacaagcactgaggatcagagtgggaa 421
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 522 tcaggctgtgtcagtgtcacccactcatcatttcacaagcactgaggatcagagtgggaa 463
Query: 422 ttcagaggtgaaatcaagagttttcgggaagaggatatatgcattgaggctgagttgttg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttcagaggtgaaatcaagagttttcgggaagaggatatatgcattgaggctgagttgttg 403
Query: 482 aaatatagcacatgaacccagtgatttattttgaggatgtatggggattggagagacaca 541
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 402 aaatatagcacatgaacccagtgatttatttcgaggatgtatggggattggagagacaca 343
Query: 542 aacataaaacaagggaaaatatcacagaaagtttacccatccctatcatatgaacaaaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aacataaaacaagggaaaatatcacagaaagtttacccatccctatcatatgaacaaaaa 283
Query: 602 ccacatggagtttaatcaaaatggggaacgtacacccgaaattatacaggacactttcca 661
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccacatggagtttgatcaaaatggggaacgtacacccgaaattatacaggacactttcca 223
Query: 662 ta 663
||
Sbjct: 222 ta 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_l20.g1 MSMg01no136_l20.g1 CHROMAT_FILE:
MSMg01no136_l20.g1 PHD_FILE: MSMg01no136_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:13 2005
(553 letters)
>mm_chr2_102571324_102572276
Length = 953
Score = 1023 bits (529), Expect = 0.0
Identities = 547/553 (98%)
Strand = Plus / Plus
Query: 1 agtgcctgctccttgatccaggatgtacccaagtaggaacagaggtgactagcattctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcctgctccttgatccaggatgtacccaagtaggaacagaggtgactagcattctct 260
Query: 61 ggggtgcagctcgggagttgcggtaagagtggggaagaacacagcactgtggggttgctg 120
||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct: 261 ggggtgcagcttgggagttgcagtaagagtggggaagaacacggcgctgtggggttgctg 320
Query: 121 taccccaattccctgccttggtgttggaactccttttcaccctgttctatgtgcacagtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccccaattccctgccttggtgttggaactccttttcaccctgttctatgtgcacagtg 380
Query: 181 agtggacattaactaaaggatgcacacacacacttgaagtgaccgtgttgatgcaaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtggacattaactaaaggatgcacacacacacttgaagtgaccgtgttgatgcaaggga 440
Query: 241 actccttagatcaggttctgccctttctgttcattaatcaggatgcaaacgattacagta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actccgtagatcaggttctgccctttctgttcattaatcaggatgcaaacgattacagta 500
Query: 301 ttgagaacttaggccctccatctgtccatcttccttccttccagtagcaggcaggatctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgagaacttaggccctccatctgtccatcttccttccttccagtagcaggcaggatctg 560
Query: 361 ggacaatcatcaaaactctgccacattcatgatggcactaggccccagcattacttattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggacaatcatcaaaactctgccacattcatgatggcactaggccccagcattacttattt 620
Query: 421 gtcagccatctcaatcagaacacatgctaaaatccaacatttagatgtaaggggttatat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcagccatctcaatcagaacacatgctaaaatccaacatttagatgtaaggggttatat 680
Query: 481 ctggtgggagtttttggttctaggatagctgtacaggtggccatatcatatttagtttac 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ctggtgggagtttttggttctaggatagctgaacaggtggccatatcatatttagtttac 740
Query: 541 tgacttgctaagc 553
|||||||||||||
Sbjct: 741 tgacttgctaagc 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
