BAC Information

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BAC

Clone NameMSMg01-136P06
Chromosome2 (Build37)
Map Location 82,947,701 - 82,948,076
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-136P06.T7 (MSMg01no136_p06.b1)MSMg01-136P06.TJ (MSMg01no136_p06.g1)
ACCAG343015AG343016
length709707
length of high quality
(start - end)
376 (334 - 709)593 (82 - 674)
definitionCHROMAT_FILE: MSMg01no136_p06.b1 PHD_FILE: MSMg01no136_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:29 2005CHROMAT_FILE: MSMg01no136_p06.g1 PHD_FILE: MSMg01no136_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCAGGGTTTCANGACATTCTACGAGTACAGGATGAAT
ATAGCTGCATAAAGATTCATTTATAGGACCAGGAAAATTATCAGTCGATG
AAGATGATTGCCTCCAAGTTAGACAACCTGAGCTCTACCACTGGAATGCA
TGCCCGTAGTGATTGGAGGAAAAAAAATTCTGGAAGTTGTCCTTTAACCT
TCATAAAAGTAGCACTTATATTCTTGTATACACACACACCCACACACCAC
ACACACACCAAATAAACAAACCAATAATTATTAATAAATACATATTAAAA
ATTCAGATTATGTGTAGGTGTTGAGGTGGGCACATGTTTATTGCTCATTT
GTGTTAGTAACCAAACAGTGAGCCATATGATGAGGCTGGGTTAAATCTTT
TGTAAAGTGCCTGCCTTGCACACATCACCAAGGAATGGGAGGTCCTGGTG
TTTCCCATCCTCCAAGCTACACAATGCCACGATTCTGTGCTTAATCTCCT
TGCTATGCAGGATATCAAAGAAATATTATTGGAAATTCATCAAAATCCTA
CTGACTAAATGACTTATGTGGATCATATCCATTGATACACGAGATTTGAA
TTTTGAAACAAAGATTAATATAAAAGTAAAAAGTCAATATAGATAAACAA
TCAAAAATT
CCCCCNCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCTGTGGCTAAGGAA
AGCCCCTGAGGCCAGGTATATATAAGGAATGTCTCTGCAGGGAGGCTCCC
AGAGGCTATTGCCTGAAGCTGTGAAGCCTGGATTTTGTTGGCTATTCCCA
AGATTTTGGAAATGCTAGAGCTATGAGATACCTACTTAAGAAGGCTGCAG
ACCTCATATGAAAACATCCCCAAGGGAGAGAAGTATGTCGCTGCCAAAAA
CGCTGAGAAGTATGTGAAGCATGTTTGGACTTCAGACATAGAGGTATGAA
ATCTGGAGTTTGCTCTGCTGGTTTTCAGTATTTCTTTGGTCCAGTATTCT
CATGAAGCTACCTTTACTTCCTTTTGGCATGCTAATATATATCTTCTGCT
ATTTGTATGCTGGAAGGATGTGATCAGCTTTTTTATTTTGATTTTACAGG
TGGGTACAGTTGAAAACTTGCCATGAGTCTCAGACCAGATTTTGAACTTT
GTACTTTCAAGCAGTGTTGAGATTTATAGACTATGGAGACTTTTGAAGTT
GGACTAAATACGTTTTTATGGGTATAGAACTATGGGGACTTGGTAGTGGA
ATGTGGTAGTTTAAATAAGGATAGNCCTCATCCACTCATTAAATTGAATG
CTTAGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no136_p06.b1 MSMg01no136_p06.b1 CHROMAT_FILE:
MSMg01no136_p06.b1 PHD_FILE: MSMg01no136_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:29 2005
         (376 letters)



>mm_chr2_82947501_82948276
          Length = 776

 Score =  634 bits (328), Expect = 0.0
 Identities = 364/376 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatacatattaaaaattcagattatgtgtaggtgttgaggtgggcacatgtttattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ataaatacatattaaaaattcagattatgtgtaggtgttgaggtgggcacatgtttattg 517

                                                                       
Query: 61  ctcatttgtgttagtaaccaaacagtgagccatatgatgaggctgggttaaatcttttgt 120
           ||||||||||||| |||||||||||||||  |||||||||||||   |||| ||||||||
Sbjct: 516 ctcatttgtgttaataaccaaacagtgagttatatgatgaggctacattaagtcttttgt 457

                                                                       
Query: 121 aaagtgcctgccttgcacacatcaccaaggaatgggaggtcctggtgtttcccatcctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 456 aaagtgcctgccttgcacacatcaccaaggaatgggaggtcctggtgtttcccatcctct 397

                                                                       
Query: 181 aagctacacaatgccacgattctgtgcttaatctccttgctatgcaggatatcaaagaaa 240
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gagctacacaatgccatgattctgtgcttaatctccttgctatgcaggatatcaaagaaa 337

                                                                       
Query: 241 tattattggaaattcatcaaaatcctactgactaaatgacttatgtggatcatatccatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tattattggaaattcatcaaaatcctactgactaaatgacttatgtggatcatatccatt 277

                                                                       
Query: 301 gatacacgagatttgaattttgaaacaaagattaatataaaagtaaaaagtcaatataga 360
           |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 276 gatacacgagatttgaattttgaaactaagattaatacaaaagtaaaaagtcaatataga 217

                           
Query: 361 taaacaatcaaaaatt 376
           ||||||||||||||||
Sbjct: 216 taaacaatcaaaaatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)