BAC Information

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BAC

Clone NameMSMg01-137D10
Chromosome2 (Build37)
Map Location 59,234,276 - 59,234,545
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1, LOC674940, Upp2, BC062650, Pkp4
Downstream geneLOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1, Baz2b, LOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137D10.T7 (MSMg01no137_d10.b1)MSMg01-137D10.TJ (MSMg01no137_d10.g1)
ACCAG343205AG343206
length729764
length of high quality
(start - end)
272 (47 - 318)68 (67 - 134)
definitionCHROMAT_FILE: MSMg01no137_d10.b1 PHD_FILE: MSMg01no137_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:49 2005CHROMAT_FILE: MSMg01no137_d10.g1 PHD_FILE: MSMg01no137_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGGAGGCGCGGA
ATTCCCTTTTTCTTCCATTTGCCTACACTTGAGGGCTCTTTGGCATGCAC
TTGCTACTGTGTCCATCTAGTCTAGAGTATGGAAGGCACAAGCACAGCCC
AGGGAGTCCATCCTGTGTCATTCCTCGGGTCCGGCCTTTAGTCAGCCTGC
CTTCTCTCTACTGTTCAGTGAATCCTTACATTAGACAACTGTGTGACTCT
TCCTAAAGAGAGGTGGAAAGAAAGATGTCTGTACACCAGTGGAGGAGTAT
GGAGATGACTTTCAGAAATGTCTTCTGGCAAGGGGTAGGCAAAGAAGGAA
GAATAAGTCATCAGTGTTGGAACTCAATGTACACTCTGAAGGAGAGAGTG
TATTTGGTGCCTGCCACATCTCTGCATCCCTCATTGACATATTCTTTGTC
CATGGTACCCATCTTTCTGGCAAGGAAACCATCTGCTGAATGATTGGTAG
AATGACGGTTCAGGCTGACGCCGATGAGTTCTTCTCTGTTTGCAGCCATG
TTGGCTGTCCAGGATGTGGCCCAGAGGTGCAAGGAGCTGGGTATCACTGC
CCTGCACATCAGACTCCGGTTCTCCGGAAGAAACTGGACCAATACTCCTG
TACTTATAGCCTAGTCATCTCTCAGACCTCTTGCTCCCTCAGTTACGAAT
AGGTCAGATCGAATATTGTTTCTCCCTCN
AGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCAGCCTTCTTGAGGACATTTTGAGCTTCCACTG
CACATGTGNATGGATGTGTGTGTATGTGTATGTCGTGTGTTACATGTGTG
TATGTGTGTAACACCCNCCCCCCANCCCCCCCCTTTCTTTCCCCCCCTCT
TCCCCCCCCCCCTCCCCCCCCTCCCTTCTCCCCCCCTCTCCCCCTCTCTT
CTTCTCCCCCTCCCCTCTATTCCCCCTCCCTTCCTTTCTTTCCCCCCCTC
CCTCCCCCCCCNCCCCCCTTTCTTTTTTTCCTCTCTCCCCTTCTCCCCCC
TCTTCTCCCCTCCTATCCTCCCCCCCTCTCCCTCCTCTTTCCCCCATCCC
CCTCCCCTCCCCTCCCCCCCTCCCCTTTTCCCCCTCTTTTCCCTCTCTCC
CCACCTTCTCCCTCCCCTCCCTTCCCTTCCCCCCCCTCCCCCCCCCCTTC
TCCTCCCCTCCCTCCCTCTCTCTCTCCTTACCCCCTCCTCACCCCCCCCT
CCTCTCTCTATCCCCCCCCCCTTTCCCCTTCCCTCCCCCTCTCCCCCTTT
CCTCCCCCTCCTCTTCTCCCCTCCTCCTCCCCCCCCACCCACCCCCCTTA
TCCCCCCTCCCCTTTCTCCCTCCATTCCCCCATCCCCTCCTCTTCCTCTC
CTCCCCCCTCCTCCTTTTTCTCTCCCCCCCCTCCATCTTCCCTCCTCTCC
CCCCCCTCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_d10.b1 MSMg01no137_d10.b1 CHROMAT_FILE:
MSMg01no137_d10.b1 PHD_FILE: MSMg01no137_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:49 2005
         (272 letters)



>mm_chr2_59234074_59234745
          Length = 672

 Score =  462 bits (239), Expect = e-135
 Identities = 263/273 (96%), Gaps = 6/273 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccctttttctt---ccatttgcctacacttgagggctctttggcatgcacttgct 59
           ||||||||||||||     || ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccctttttc--aggcc-tttgcctacacttgagggctctttggcatgcacttgct 259

                                                                       
Query: 60  actgtgtccatctagtctagagtatggaaggcacaagcacagcccagggagtccatcctg 119
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 actgtgcccatctagtctagagtatggaaggcacaagcacagcccagggagtccatcctg 319

                                                                       
Query: 120 tgtcattcctcgggtccggcctttagtcagcctgccttctctctactgttcagtgaatcc 179
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtcattccttaggtccggcctttagtcagcctgccttctctctactgttcagtgaatcc 379

                                                                       
Query: 180 ttacattagacaactgtgtgactcttcctaaagagaggtggaaagaaagatgtctgtaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 380 ttacattagacaactgtgtgactcttcctaaagagaggtggaaagaaagatgtctgtgca 439

                                            
Query: 240 ccagtggaggagtatggagatgactttcagaaa 272
           |||||||||||||||||||||||||||||||||
Sbjct: 440 ccagtggaggagtatggagatgactttcagaaa 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)