BAC Information

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BAC

Clone NameMSMg01-137J05
Chromosome2 (Build37)
Map Location 85,246,178 - 85,246,570
singlet/doubletsinglet
Overlap genenone
Upstream geneTfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992
Downstream geneOlfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137J05.T7 (MSMg01no137_j05.b1)MSMg01-137J05.TJ (MSMg01no137_j05.g1)
ACCAG343464AG343465
length723737
length of high quality
(start - end)
395 (49 - 443)250 (79 - 328)
definitionCHROMAT_FILE: MSMg01no137_j05.b1 PHD_FILE: MSMg01no137_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:19 2005CHROMAT_FILE: MSMg01no137_j05.g1 PHD_FILE: MSMg01no137_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAGGCGCG
GAATTCCAGCTTTATGTCGTACAAACGTTGTTTCCTAGTGCACCATGGAT
TTAAACATGTACATTTGATTTTGAGAAAAACCAATATCGATTACTTGTGA
CTTAGCAATGCAGAAAACGTTTAGATAAATTATAAAACAATATGGAATAT
AGAAAAATTTGAGAGTAGAGAGAGAATTCATAGACTAAGAGAACTAGCTG
TGAAATTGGACATAGGTGGACAGGTTCCTATAACTTAAAAAGAAATATAA
GGATCTCTGTGGCTTGCTGGCCACCTTCTTATGTACAGGTAAACTAGAGA
CCCTTGTCAAAGAAATAAGGAGCAAGACAACCTACATCATTCTCTGGTGC
ACATACACACCTGCTCAGACATAGGTCTATACCATCTACACACAAAATAT
AAAGTACCCCCATTATAACTCTCAACAGTACCAAAAGGAAAATTATAGGA
ATTCAGCCATACATATTTGTTTCCTCCCCTATAATTATTAAAGATTCACT
ATGTATAACTTTCATGAACTATTCTACTGGAAATTTTATGAAAGACTCGA
GCTTGGTTACTGTAGATAAAAAACTAAACGTTTACCTGACTATGACTCGA
TATACTGCTTACCATTAATCTCCGCGGTATATATGACCGCTTACTTACCA
TGTTACTCTCCCTCTTTCCCCTC
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTGGAATTCAGGGCCCCCATATCTATGTAAAA
AAGCAAAATTCGAGCAATTCCAGGTGTGAGAAGACTCAGGATGATCCCTG
CAGTCACTAGCGGGGCAGTGTAGGCAAAACTCTGAGCTCCCGGTTCAGTG
AGAGACACTGGGTCAAAACACAAAGCAAACAAACAAACAGACTAACACCA
CAAAATAGAAAGTGGCGAGGCAAGACATCCAACTGTGACCTCAGCATCAC
ACACACACACACTTGAGAGAGAGAGAGATTTTTATAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAACTGCACACATAGGCACTATCCCCCCCTCA
AAGCCCTGTTTATATCTTACCCATAGATACTCTCTCCAGCACATACACCC
CAGCATACACTTGCACATTTTCTATAGAAAATTGAAAACTAATTTGGCTT
TTAAAATTAACCTATTTTTTACATTCTGCACCTTATTCCCCTCCACTTAC
TCTCCGACTGCTCCACATCCCCTTACCTCCTCCTTCCCCGTTTGTCTCTC
CGTGAATTGTCCCTCCTTTCAATCCTAACTCGCATTTTTCCTTCTCTGGT
GTTTCATGTCTCCCTGCTTGTTAGGCTGTTTCTCTTATTAATCCCCTTTT
TTCCCCTCCCTCCCTCTTTTGCCCCCTTTTTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_j05.b1 MSMg01no137_j05.b1 CHROMAT_FILE:
MSMg01no137_j05.b1 PHD_FILE: MSMg01no137_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:19 2005
         (395 letters)



>mm_chr2_85245976_85246770
          Length = 795

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%), Gaps = 2/394 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattccagctttatg-tcgtacaaacgttgtttcctagtgcaccatggatttaaacatg 61
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattccagctttatgctc-tacaaacgttgtttcctagtgcaccatggatttaaacatg 261

                                                                       
Query: 62  tacatttgattttgagaaaaaccaatatcgattacttgtgacttagcaatgcagaaaacg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacatttgattttgagaaaaaccaatatcgattacttgtgacttagcaatgcagaaaacg 321

                                                                       
Query: 122 tttagataaattataaaacaatatggaatatagaaaaatttgagagtagagagagaattc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tttagataaattataaaacaatatggaatatagaaaaatttgagagtagagagagaattc 381

                                                                       
Query: 182 atagactaagagaactagctgtgaaattggacataggtggacaggttcctataacttaaa 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 atagactaagagaactagctgtgaaattggacataggtggacaggttcctataacttaaa 441

                                                                       
Query: 242 aagaaatataaggatctctgtggcttgctggccaccttcttatgtacaggtaaactagag 301
           ||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||
Sbjct: 442 aagaaatataaggatctctgtggcttgctggccaccagcctatgtacaggtaaactagag 501

                                                                       
Query: 302 acccttgtcaaagaaataaggagcaagacaacctacatcattctctggtgcacatacaca 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 acccttgtcaaagaaataaggagcaagacaacctacatcattctctggtgcacatacaca 561

                                             
Query: 362 cctgctcagacataggtctataccatctacacac 395
           |||||||||||||||  |||||||||||||||||
Sbjct: 562 cctgctcagacatagacctataccatctacacac 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)