Query= MSMg01no137_n09.b1 MSMg01no137_n09.b1 CHROMAT_FILE:
MSMg01no137_n09.b1 PHD_FILE: MSMg01no137_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
(579 letters)
>mm_chr2_111983543_111984522
Length = 980
Score = 1054 bits (545), Expect = 0.0
Identities = 569/577 (98%), Gaps = 1/577 (0%)
Strand = Plus / Plus
Query: 4 gaattcaagacttttcccatctgaattagttaatgacaggcagatttgactatttctagc 63
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 gaattcaagacttttatcatctgaattagttaatggcaggcagatttgactatttctagc 263
Query: 64 agttttacatgtagttataattgaaaagtaagctttgtggtcaattacagaggaaaaaat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttttacatgtagttataattgaaaagtaagctttgtggtcaattacagaggaaaaaat 323
Query: 124 ctaataattttagatagtacatatttttgagactagaagatgtaggttaatattgcacat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaataattttagatagtacatatttttgagactagaagatgtaggttaatattgcacat 383
Query: 184 atgtatatgaaaaatattacactccctctttttctagtttttttt-gcaaagaaatatgt 242
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 384 atgtatatgaaaaatattacactccctctttttctagtttttttttgcaaagaaatatgt 443
Query: 243 gcaacctgtaagtcattataaatgtttttaaatattttctagctaaaatgtgaaaatact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaacctgtaagtcattataaatgtttttaaatattttctagctaaaatgtgaaaatact 503
Query: 303 gatttagtagtaaactacaaaataatagtattttataaaccttgtttagaactatataag 362
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 gatttagtagtaaactacaaaataataatattttataaaccttgtttagaactatataag 563
Query: 363 aagaaaaatgaagaaattataatataaaaagcatgacaaactattaataaatagatgtat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagaaaaatgaagaaattataatataaaaagcatgacaaactattaataaatagatgtat 623
Query: 423 aaaatgaggaagaaatggattatgcttttcatataacatattgtttactttacatatact 482
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 624 aaaatgaggaagaaatggattatgcttttcatataatatattgtttactttacatatact 683
Query: 483 tgttataattattacaaaatttagggagagtatctcccaacttatgttaccaatgattca 542
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttataattaatacaaaatttagggagagtatctcccaacttatgttaccaatgattca 743
Query: 543 aaccaggcgtcacctgaatatactgaattttcaagtt 579
||||||| |||||||||||||||||||||||||||||
Sbjct: 744 aaccaggtgtcacctgaatatactgaattttcaagtt 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n09.g1 MSMg01no137_n09.g1 CHROMAT_FILE:
MSMg01no137_n09.g1 PHD_FILE: MSMg01no137_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
(448 letters)
>mm_chr2_112085240_112086089
Length = 850
Score = 752 bits (389), Expect = 0.0
Identities = 436/457 (95%), Gaps = 11/457 (2%)
Strand = Plus / Minus
Query: 1 caaagttaccacccactctgatatacccaagggagcaatcccggtttccaaccccgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 caaagttaccacccactctgatatacccaagggagcaatcccggtttccaaccccgacaa 413
Query: 61 actggttttcctctgactcagcctatgtggtagaactggtccaacagacttgggggccac 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 412 actggttttcctctgactcagcctatgtggtagaactggtcgaacagacttgggggccac 353
Query: 121 tggcctaac--tttttttttcttttttaaatactaaaaatctaaacagaatagatgttat 178
|| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 352 tgacctaactttttttttttcttttttaaatactaaaaatctaaacaggatagatgttat 293
Query: 179 gtctgtgggggatatgttggctgatggtcttcctcaatttaagaaatccaaacagctcaa 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 292 gtctgtgggggatatgttggctgacggtcttcctcaatttaagaaatccaaacagctcaa 233
Query: 239 aacttaaaatttttaattactttaaaacttttagccgggcggtggtggcgcacgcctttg 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 232 aacttaaaatttttaattactttaaaacttttagcaaggcggtggtggcgcacgcctttg 173
Query: 299 atcgcagcactcaggaggcagaggctgggggatttctgagttcaaggccagtctggtcta 358
||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 172 atcccagcattcaggaggcagaggctgggggatttctgagttcgaggccagcctggtcta 113
Query: 359 cagagtgagttccaggacagccagggctacacagagaaaccctgtttc-------aaaaa 411
|||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 112 cagagtgagttccaggacagccagggctacacagagaaaccctgtttcaaaaccaaaaaa 53
Query: 412 accaaaaaaaccttttagaaaggtgtaactacatcac 448
| ||||||||||||||||||||||||||||||||||
Sbjct: 52 a--aaaaaaaccttttagaaaggtgtaactacatcac 18
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 850
Length adjustment: 10
Effective length of query: 438
Effective length of database: 840
Effective search space: 367920
Effective search space used: 367920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
