BAC Information

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BAC

Clone NameMSMg01-137O09
Chromosome2 (Build37)
Map Location 93,043,446 - 93,043,692
singlet/doubletsinglet
Overlap geneTspan18
Upstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik
Downstream geneLOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137O09.T7 (MSMg01no137_o09.b1)MSMg01-137O09.TJ (MSMg01no137_o09.g1)
ACCAG343705AG343706
length728750
length of high quality
(start - end)
249 (72 - 320)---
definitionCHROMAT_FILE: MSMg01no137_o09.b1 PHD_FILE: MSMg01no137_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:45 2005CHROMAT_FILE: MSMg01no137_o09.g1 PHD_FILE: MSMg01no137_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAAGGGGCGGA
ATTCACCCCTGTTCCTCTCCACATACGGATGGATCTCACTACCTCCCAAC
TCAGCCTCCTGCCTTCAGATGCTCTGATGTCACCATCACCTCCGCAGACA
GAAGGGGTTTCCATTTTTCCGTCTGTGTACCCCTTCACTCTCTCTCCTTT
CTAGAGGTTAAGGTCATGCCTCTTGTCTGCAGACTTAACCCCACAGCATC
TCCTACCGTGACACCTTCTGACCTTTTGCTGAACATTTATTTTGTTAGTC
TCTCTAGGCTCAGATTACTCTTACTAATAGGTTCACAACCAACCAACCAA
CACACACACACACACACACACACACACACATACAAACACACACTAATACC
CCAAACTAATAGGTTCACAACCAACCAACACACACATACACACATCCTAT
ACTAATAGGTTCACAACCAACCAACACACACACACACACTAACTTGAACT
GCAGGCTAGGTTAGCAACTATTTGCTAGATGCCTGACTCTGCCAGGACCG
TGTTGAATCCCTTATTGCTGTCTGTCAAGATCTCAAATTTGATTATATAT
GTCTGCCAAGGTCCCAATATGTCAACAGCGGTGTAATGGAACAGCTATGC
GTCTGCTCTCCTCTCTCAGATGGAAGAATCTGACCTGGACTCCGCCTTCC
TTTGTCTTTCTTGCCACTGTGAGTATAA
CACTGCTGTGAGAGGCCTGGCGACCGCCTGCGTCANTACGAGAGGTGAAC
TATAGAAGTTTCGTAAAAGTGGGGAAGAGTCCGTGCTGCAACCAAGACTT
AAAATAGATAAAAGGCACGCCCTCCCTCTGCCGCCCCAGGCCCGCGGCAG
GTCACAGAGAGGCAAGCGGTCCCTAAGCCCCCCAGCCCGGTCTCGAAGCA
ACGGCGACCCGGTCCCAGCAACTAGAACAGCGATTGCATCCCGCCCTCTT
CCCGCTCTGCCCCCTGTCTATGCGCTCTCTTTGCTATTGTCGAGTCCGAA
CATACGATTCCTTTGTTTTTTTTTCGCTTCTGTTTTCTCGCGCCTTCATC
CTAATTTTTTTTCTACTTCCGCCACCAAGTCGCTCTATGTGTTCGTTATT
TTATAATCTAAGTCCGCATAGTTCCTAATCCCTCCTTTATATATGTCTAT
TTCCTGAGAGACTTAACTCAAAATAAACCCTCACTAGCACCGACTTTTAT
TTTTTTGCTTATTTCTTATGTCTGTTTCTTTCTTTTTACATTGTCCACTA
GTGTACTTTCTCTCTTTATCTAACCTCTATTTCTTTATTACCTACATGTT
CTTACCTTACTTTTATTATTATTCTTCCTCTCTCCCAATTTACTATCTAT
ACCCCCCCTTTTCTATATTTAATTTTTTTATCTTCTCATCCATTTATAAT
ATTTAATTTTATATATTAAACTTTCACAATACATCAATTCCACCCACCAC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_o09.b1 MSMg01no137_o09.b1 CHROMAT_FILE:
MSMg01no137_o09.b1 PHD_FILE: MSMg01no137_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:45 2005
         (249 letters)



>mm_chr2_93043246_93043894
          Length = 649

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catacggatggatctcactacctcccaactcagcctcctgccttcagatgctctgatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 catacggatggatctcactacctcccaactcagcctcctgccttcagatgctctgatgtc 388

                                                                       
Query: 61  accatcacctccgcagacagaaggggtttccatttttccgtctgtgtaccccttcactct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 accatcacctccgcagacagaaggggtttccatttttccgtctgtgtaccccttcactct 328

                                                                       
Query: 121 ctctcctttctagaggttaaggtcatgcctcttgtctgcagacttaaccccacagcatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctctcctttctagaggttaaggtcatgcctcttgtctgcagacttaaccccacagcatct 268

                                                                       
Query: 181 cctaccgtgacaccttctgaccttttgctgaacatttattttgttagtctctctaggctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cctaccgtgacaccttctgaccttttgctgaacatttattttgttagtctctctaggctc 208

                  
Query: 241 agattac 247
           |||||||
Sbjct: 207 agattac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)