Query= MSMg01no137_p03.b1 MSMg01no137_p03.b1 CHROMAT_FILE:
MSMg01no137_p03.b1 PHD_FILE: MSMg01no137_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:49 2005
(596 letters)
>mm_chr2_28092190_28093185
Length = 996
Score = 1108 bits (573), Expect = 0.0
Identities = 588/593 (99%), Gaps = 2/593 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgtga-ttcttggaggacccttgctctcgtcccactcggaccagcaagaggc 63
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtgatttc-tggaggacccttgctctcgtcccactcggaccagcaagaggc 263
Query: 64 cttaaatgcacacgggcacaggtgactactctcctactgcttcctgccctaaaagccacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaaatgcacacgggcacaggtgactactctcctactgcttcctgccctaaaagccacc 323
Query: 124 cctataattagctggatgggtctgctagcagctccaggatgtttgtcttgcccagtctgg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctataattagctggatgggtctgctagcagctccaggatgtttgtcttgcccagtctgg 383
Query: 184 cactgtccctgttaaattggctgtggcaaagccataataaagaagacaaacagcggcagc 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 384 cactgtccctgttaaattggctgtggcaaagccataataaagaagacaaacagcagcagc 443
Query: 244 gtaggatcatcctcaggtgctacctccgaaggaccaggagaggagagattcaattaaagg 303
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 gtaggatcatcctcaagtgctacctccgaaggatcaggagaggagagattcaattaaagg 503
Query: 304 atacggctgttctgcccgaccttccttttactggagctgggccgtgcagacgctccttct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atacggctgttctgcccgaccttccttttactggagctgggccgtgcagacgctccttct 563
Query: 364 ccctatcccttcctttctgggaagatgtccatctgcgccagcggagggaggctggggaca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccctatcccttcctttctgggaagatgtccatctgcgccagcggagggaggctggggaca 623
Query: 424 gaactggccctgtcttcagagaactcctagatccactggccctgactaccctggcaagat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaactggccctgtcttcagagaactcctagatccactggccctgactaccctggcaagat 683
Query: 484 agtgagagtcagtttgacagtattggctatgaagactgctcactgctataaaagtgtggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 agtgagagtcagtttgacagtattggctatgaagactgctcactgctataaaagtgtggt 743
Query: 544 gtaacaagagacacctaggcagcctcttccggtccttatcagtcctaaaatgg 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtaacaagagacacctaggcagcctcttccggtccttatcagtcctaaaatgg 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_p03.g1 MSMg01no137_p03.g1 CHROMAT_FILE:
MSMg01no137_p03.g1 PHD_FILE: MSMg01no137_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:49 2005
(477 letters)
>mm_chr2_28251844_28252718
Length = 875
Score = 868 bits (449), Expect = 0.0
Identities = 470/477 (98%), Gaps = 2/477 (0%)
Strand = Plus / Minus
Query: 1 actttctaataatgcattgttaacatgactattaaatgcctgggactctttttttttgtc 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 675 actttctaataatgcattgttaacatgactattaaatgcctgggactc-ttttttttgtc 617
Query: 61 tctaaatggtgtttgccagtggctgtgtgtatatcatctgaaagtgagctcttactgcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tctaaatggtgtttgccagtggctgtgtgtatatcatctgaaagtgagctcttactgcat 557
Query: 121 ctgtatgtctccagtcaccaaggccatgctaggtaagggcccgattagctaatggattcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctgtatgtctccagtcaccaaggccatgctaggtaagggcccgattagctaatggattcc 497
Query: 181 agggatccatagcaggcatggtgtccaggagacttccagggggtctgctgggcaacgaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agggatccatagcaggcatggtgtccaggagacttccagggggtctgctgggcaacgaga 437
Query: 241 tctcatttaccgtgaagcccagtgtgtttgtgtcctgtcgcagaggctgctatctccttg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctcaggcaccgtgaagcccagtgtgtttgtgtcctgtcgcagaggctgctatctccttg 377
Query: 301 gcctggagcagttctgagctgtacacatagacatacagacatacacatggagcaagaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gcctggagcagttctgagctgtacacatagacatacagacatacacatggagcaagaccc 317
Query: 361 ttcttcataggaagtatttcgagtcatcccagaggcttccagccacattgaaaggtctgt 420
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 316 ttc-tcataggaagtatttcgagtcatcccagaggcttccagccacattggaaggtctgt 258
Query: 421 ccctacaaatcaggatcaatcaccagggttaactgtgcatacagacccctgcagtca 477
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 257 ccctacaaatcaggatcaatcaccaaggttaactgtgcatacagacccctgcagtca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 875
Length adjustment: 10
Effective length of query: 467
Effective length of database: 865
Effective search space: 403955
Effective search space used: 403955
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
