Query= MSMg01no137_p11.b1 MSMg01no137_p11.b1 CHROMAT_FILE:
MSMg01no137_p11.b1 PHD_FILE: MSMg01no137_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:50 2005
(674 letters)
>mm_chr2_95029049_95030122
Length = 1074
Score = 1139 bits (589), Expect = 0.0
Identities = 653/683 (95%), Gaps = 14/683 (2%)
Strand = Plus / Plus
Query: 6 aattcaaatcaatatcttgggcaccattttgttgtggtaaatctccaactcaaatatgcc 65
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aattcaaatcaatatgttgggcaccattttgttgtggtaaatctccaactcaaatatgcc 265
Query: 66 ccagcaatgaaaatacaactcaattaatatgaatacattctgtgcgcctagattgggcag 125
|||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 266 ccagtaatgaaaatgcaactcaattaatatgaatacattctgtgtgcctagattgggcag 325
Query: 126 acctactgctatactaccatcttcctatctacgagaccccttagaacttacggtttcccc 185
| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 326 atctactgctatactaccatcttcccatctatgagaccccttagaacttacggtttcccc 385
Query: 186 aggccatatgcttctttatagttttgatagtcaagtgattcttacagggactacataaaa 245
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 386 aggccatgtgcttctttatagttttgatagtcaagtgatttttacagggactacataaaa 445
Query: 246 tcctatccctaaaatgttgggaaaatgatggtttgggaaacttgctaactttgcgtggaa 305
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 446 tcctatccctaaaatgttggaaaaatgatggcttgggaaacttgctaactttgcgtggaa 505
Query: 306 gtttttactttcttgttgatttttctatagcttcagatcttctgctgctctaaggtgtaa 365
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtttctactttcttgttgatttttctatagcttcagatcttctgctgctctaaggtgtaa 565
Query: 366 ggaatgtgtgatgaaacaagttgtcttatcaggtattctggctggttagttcaattgcct 425
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggaatgtgtgatgagacaagttgtcttatcaggtattctggctggttagttcaattgcct 625
Query: 426 gaaatacttgctcctggggcaggtattttgaatttttaatgtagttttacttttaatgta 485
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaaatactcgctcctggggcaggtattttgaatttttaatgtagttttacttttaatgta 685
Query: 486 atgcatccattttatctcttccctctttaaaactgtctgtgaagaacgactgagtaaatt 545
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 686 atgcatccattttatctcttccctctttaaaattgtctgtgaagaacgactgagtaaatt 745
Query: 546 cacaattagcactgctgtcgaatgtaatttccccagaactggcagtcagggaacagggtg 605
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 746 cacaattagcactgctgtcgaatgtaatttccacagaactggcagtcagggaacagggtg 805
Query: 606 tggaa--------------aggtgcttagaaagtgaactactttatcattttgtaaatag 651
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tggaagatacatctttgaaaggtgcttagaaagtgaactactttatcattttgtaaatag 865
Query: 652 tacagaggttatagcttcatgca 674
|||||||||||||||||||||||
Sbjct: 866 tacagaggttatagcttcatgca 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_p11.g1 MSMg01no137_p11.g1 CHROMAT_FILE:
MSMg01no137_p11.g1 PHD_FILE: MSMg01no137_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:50 2005
(651 letters)
>mm_chr2_95211937_95212984
Length = 1048
Score = 1205 bits (623), Expect = 0.0
Identities = 643/651 (98%), Gaps = 3/651 (0%)
Strand = Plus / Minus
Query: 1 ccattagaaattaatatccagtacatcaatattgagggtggggcttaatgggaagtgtat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 848 ccattagaaattaatatccagtacatcaatattgagggtggggcgtaatgggaagtgtat 789
Query: 61 aggtagtaagttcagagctctagtgaatgaattcatgccactacgaaaagggctttgtga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aggtagtaagttcagagctctagtgaatgaattcatgccactacgaaaagggctttgtga 729
Query: 121 ggtgactttgtattcatgccactccatcttttgtcatgagagggcatggggagaagccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggtgactttgtattcatgccactccatcttttgtcatgagagggcatggggagaagccat 669
Query: 181 ggccagatgctggtgattgtaactcaagctccagacttaagtaaaagaatttattgttcc 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 668 ggccagatgctggtgattttaactcaagctccagacttaagtaaaagaatttattgtccc 609
Query: 241 tatacattacccagtgagtgcattgtaaaaacagtacagaacatggtgtgacttttccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tatacattacccagtgagtgcattgtaaaaacagtacagaacatggtgtgacttttccta 549
Query: 301 ctctattttcacgtgcttgcttgcttatttatttatttggtcacaacaactgtcctaggt 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 548 ctctattttcacgtgcttgcttgcttatttatttatttggtc---acaactgtcctaggt 492
Query: 361 catgacctagatatcaaagcaagaaaaatgtgttcttaaatgcagatttattaaaaactc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catgacctagatatcaaagcaagaaaaatgtgttcttaaatgcagatttattaaaaactc 432
Query: 421 tcacaaagattccaatttaaaaattagtgaggcatttaccaaaggccaggccaataaaga 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 431 tcacaaagattccaatttaaaaattaatgaggcatttaccaaaggccaggccaataaaga 372
Query: 481 acattaaatagttggcagttgttgcttatactaaatagaatgtcattctttcaattatct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acattaaatagttggcagttgttgcttatactaaatagaatgtcattctttcaattatct 312
Query: 541 tgaagcagatttctcttattcttgtatttgaagagaggtcttttggagtattcagatcag 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 tgaagcagatttctcttattcttgtatttgaagagaggacttttggagtattcagatcag 252
Query: 601 tcactgatctccaaatgcttcagctacataatatttctatagagatataag 651
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcactgatctccaaatgcttcagctacataatatttctatagagatataag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1048
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1038
Effective search space: 665358
Effective search space used: 665358
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
