Query= MSMg01no137_p13.b1 MSMg01no137_p13.b1 CHROMAT_FILE:
MSMg01no137_p13.b1 PHD_FILE: MSMg01no137_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:51 2005
(583 letters)
>mm_chr2_139186845_139187827
Length = 983
Score = 1067 bits (552), Expect = 0.0
Identities = 577/588 (98%), Gaps = 5/588 (0%)
Strand = Plus / Plus
Query: 1 acacttgctacacaacagacacataaagcagtggaaatataagccatcaaatgcacaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttgctacacaacagacacataaagcagtggaaatataagccatcaaatgcacaatc 260
Query: 61 cattttatttaaaactcacaattagtcttttaatttacaaccttacatattctggaagcc 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 cattttatttaaaactcacaattagtcttttaatttacaatcttacatattctggaagcc 320
Query: 121 tattgtgtactagaaacagagctagtcactggagaaataagagtaaaccaggataaacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgtgtactagaaacagagctagtcactggagaaataagagtaaaccaggataaacca 380
Query: 181 ggaccagtctctgccttccagactaggggcaaggtgaacagacaaaaatgggctattctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaccagtctctgccttccagactaggggcaaggtgaacagacaaaaatgggctattctg 440
Query: 241 gtgctatatatggagtgatttatacatgtcagaactgatcataaaaagtaaccaacgctg 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgctatatagggagtgatttatacatgtcagaactgatcataaaaagtaaccaacgctg 500
Query: 301 ggaagaaagaaatagacatccaccctggcctgaaggtctgtgactgcagaccagcaagcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaagaaagaaatagacatccaccctggcctgaaggtctgtgactgcagaccagcaagcc 560
Query: 361 tggcagtatgctttgttgagcataaaacataccctatgctctaggaaaagtagatgtggc 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcagtatgctttgctgagcataaaacataccctatgctctaggaaaagtagatgtggc 620
Query: 421 ccttcttcactataattcggacttaagctggcgatggcaacaatgagcatgattttcatt 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 ccttcttcactataattcggacttaagctggcaatggcaacaatgagcatgattttcatt 680
Query: 481 tgatt-----ttcatatacctatggcaacctgggggtggtagggtgataggatctttggc 535
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 681 tgagtgtgtcttcatatacctatggcaaactgggggtggtagggtgataggatctttggc 740
Query: 536 ttgatcacttgtagacccaacaatctacctagaagagttcctagcaga 583
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgatcacttgtagacccaacaatctacctagaagagttcctagcaga 788
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_p13.g1 MSMg01no137_p13.g1 CHROMAT_FILE:
MSMg01no137_p13.g1 PHD_FILE: MSMg01no137_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:51 2005
(628 letters)
>mm_chr2_139355345_139356372
Length = 1028
Score = 1067 bits (552), Expect = 0.0
Identities = 606/628 (96%), Gaps = 8/628 (1%)
Strand = Plus / Minus
Query: 1 aaggctactatgggtaacaaggggatattctttcagaagggtgtgtgataattgaactag 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 824 aaggctactatgggtaacaaggggatattctttcagaagggtgtgtaataattgaactag 765
Query: 61 aaagttggcatggagactttgtagtatatttaagtaaaaagaatcagaaaatgttgttag 120
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 764 aaagttggcatggagactttgtagtatatttaagtaaaaataatcagaaaatgttgttag 705
Query: 121 gatttatacaaaccaaagcctctaaatgcacagaaataaataaaaataaaggggaatgac 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gatttatacaaaccaaagcccctaaatgcacagaaataaataaaaataaaggggaatgac 645
Query: 181 aagggccacttggaggaaatgtaagatagcacttaaaacagaaacagttacttaagctga 240
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 644 aagggccacttggagaaaatgtaagatagcacttaaaacagaaacagtttcttaagctga 585
Query: 241 aag----gaaattttggagatagaaaaattctagaaaaatattatacgaatattggccag 296
||| |||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 584 aagaaaagaaa----ggagatagaaaaattctagaaaaatattatatgaatattggccag 529
Query: 297 aaactctcccaattttcatgacatttattgattacatatttaaatgcttatttccatcta 356
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 528 aaactctcccaattttcatgacatttattgattacatatgtaaatgcttatttccatcta 469
Query: 357 aaataagatataagacaaatagacccactatcaatgtgatagtaaaaatgtggatgataa 416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 468 aaataagatataagacaaatagatccactatcaatgtgatagtaaaaatgtggatgataa 409
Query: 417 agatgaagagcaagaaaaagcaactcatcacgccctagtgacggcagtgaggtgggtagc 476
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 408 agatgaagagcaagaaaaagcaactcatcacaccctagtgatggcagtgaggtgggtagc 349
Query: 477 tctccctcagcacacatgatggtgcagaaggcaacattctaaatgtagaaagaatagtaa 536
|||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 348 tctctctcagcacacatgatggtgcagaaggcaatattctaaatgtagaaagattagtaa 289
Query: 537 atgaggattggaaaaatcatgattgaaaagtgactgtaaaataaagttacaagataaaca 596
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 atgaggattggcaaaatcatgattgaaaagtgactgtaaaataaagttacaagataaaca 229
Query: 597 agaactgggagagtttatgaataaaaaa 624
||||||||||||||||||||||||||||
Sbjct: 228 agaactgggagagtttatgaataaaaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
