Query= MSMg01no138_b17.b1 MSMg01no138_b17.b1 CHROMAT_FILE:
MSMg01no138_b17.b1 PHD_FILE: MSMg01no138_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:02 2005
(598 letters)
>mm_chr2_157787568_157788565
Length = 998
Score = 967 bits (500), Expect = 0.0
Identities = 518/524 (98%)
Strand = Plus / Minus
Query: 75 tgaagataaatctcaaagactacaagagaatagatgcatagtctctaaagcagtgtcaaa 134
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 998 tgaagataaatctcaaagactacaagagaatagatgcatagtctctaaagcaatgtcaaa 939
Query: 135 aaaaatggcaggtgttttgttgttgatgtcttggtttttgacatggggtctcactacaaa 194
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 938 aaagatggcaggtgttttgttgttgatgtcttgggttttgacatggggtctcactacaaa 879
Query: 195 ccctgactgaccttgaagtcacaaagtttcttccgcttcggtttcccaagtgctagactt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 ccctgactgaccttgaagtcacaaagtttcttccgcttcggtttcccaagtgctagactt 819
Query: 255 acaggtgtgcaccgccacacaaggcgcgggaggcttttttcctgggcagcactggatgac 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acaggtgtgcaccgccacacaaggcgcgggaggcttttttcctgggcagcactggatgac 759
Query: 315 ctacagaaaactggtattctgagcatgcccagcgtggggagtcactaattctctactaaa 374
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 758 ctacagaaaactggtattctgagcatgcccagcatggggagtcactaattctctactaaa 699
Query: 375 tgaactttcaagaaggagaattagttacaggcattttcagctcatagttcatgacccaca 434
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 698 tgaactttcaagaaggagaattagttacaggcattttcagctcgtagttcatgacccaca 639
Query: 435 gctttactgaaaagattacagaagatagccaaacacactggtaaatctaacttccataat 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gctttactgaaaagattacagaagatagccaaacacactggtaaatctaacttccataat 579
Query: 495 ttgtttttttatttatttgtgtaaggctggggattacggtcaggcttgtacactatagac 554
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttatttttttatttatttgtgtaaggctggggattacggtcaggcttgtacactatagac 519
Query: 555 acccactcccctacagacctatattcctgattaatatattctag 598
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 acccactcccctacagacctatattcctgattaatatattctag 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space: 580944
Effective search space used: 580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_b17.g1 MSMg01no138_b17.g1 CHROMAT_FILE:
MSMg01no138_b17.g1 PHD_FILE: MSMg01no138_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:02 2005
(572 letters)
>mm_chr2_157645519_157646488
Length = 970
Score = 884 bits (457), Expect = 0.0
Identities = 476/483 (98%), Gaps = 2/483 (0%)
Strand = Plus / Plus
Query: 1 tgtgtgtgccgtgtgcctaagcaccgggaatatgaaatatgaaagatgcttctacaactg 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtgtgccgtgtgcctaagcacagggaatatgaaatatgaaagatgcttctacaactg 260
Query: 61 taggcttatacttcctttaatgtatcttttttgttctgctctactctctaaagacaacac 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcttatacttcctttaatgtatcttttttgttctgctctactctctaaagacaacac 320
Query: 121 tgcttcagcttctcagttagtccaaagaatcttaaagttggaaataaagtggagaagtgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttcagcttctcagttagtccaaagaatcttaaagttggaaataaagtggagaagtgg 380
Query: 181 cttgtttgggtgttttattgagaaatgtggctgggaaggaaaagagagttcctgaggagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgtttgggtgttttattgagaaatgtggctgggaaggaaaagagagttcctgaggagg 440
Query: 241 tgaccagaatggagtaccactaagggacagcatttgaaattgagaggctctgggtgctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaccagaatggagtaccactaagggacagcatttgaaattgagaggctctgggtgctgc 500
Query: 301 ttgcaaacacatttggaattttctaatcatggaattcgtggagttgagccggggtcaaac 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcaaacacattaggaattttctaatcatggaattcgtggagttgagccggggtcaaac 560
Query: 361 atcgtaaaatctctagtcacatgcagtgacaactctgaacgaagatgtctctgaaagtgc 420
||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 561 atcgtaaaacctctagtcacatgcagtgacaact--gaacaaagatgtctctgaaagtgc 618
Query: 421 cttacaaattggacgtatacttattaagcataatttagactgtgggtgttcattctgttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cttacaaattggacgtatacttattaagcataatttagactgtgggtgttcattctgttt 678
Query: 481 tct 483
|||
Sbjct: 679 tct 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 970
Length adjustment: 10
Effective length of query: 562
Effective length of database: 960
Effective search space: 539520
Effective search space used: 539520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
