CCTTTTCCATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAG
AGGCGCGGAATTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAG
CAAACCAATAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCC
CACTAAAATCAGGGACTAGACAAGGCTGTCCACGCTCGCCCTACCTATTC
AACATTGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGAT
CAAGGGGATACAAATTGGAAAAGATGAAGTCAAAATATCACTTTTTGCAG
ATGATATAATAGTATATATAAGTGACCCTAATAATTCCACTAGAGAACTC
CTAAGCCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTC
AAACAAGTCAATGGCCTTTTTGTACACAAAGGATAAACAGGCTGAGAAAG
AAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATAC
CTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTT
CAAGTCTCTAAAGAAAGAAATTAAAGAAGATCTTCAGAAGATGGAAAGAT
CTCCCATGCTCATGGATTGGCACGATCAACATTGGTAAAATGGCCATCTT
GCCCAAAGCAATCTACAGATTCAATGCATTCCCCCATCAAATTCCTACCC
AATTCTTCAACGAT

CCCCCNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAATTCCAGGACACCGGCCTCG
GGTACTCATTTGTCGTTATGCTACAGATAGAGATTGTGTGGCAATGAATT
TAGACACAAACTCAAGAGCTGGCAAGATGGCCATTAGGAACAGACACCTG
GCACTAAGCCTGACATCCAGGGTTTGATCCATGAAACTCAGAGCATAAAA
GGAGAGAAGTAATTCCCACAGTCTGACCTCTACAAGAACTGGATGGCATG
GCCATTTATCTCTCTCAACCTAATATATACACACAATTCTTTAATAACAT
AAAAAGAGAGAGAAACCTGAGACAAGAAATAATTAGGTGCATATCTTTCC
CAAAACAAGAGTATCTATAAGGCTACATTTTCAAGACACCATTGAAGATG
CTAACCTTTTACCCCACCCTGTTGCTTTGGTGTGCTCTTTCTCTTCATTT
TTATCCCCACTCCAACTTTCTACTCTTTGCTAGCAAGTTCCTATTCAGCC
TCCAAGCCCTAGCGAAAGAGAGGTCTCTTTTTTAGAGGTGCTCCTAAGCC
CTGTCCCAGAGCTGGGGTTCTGTGTTCTTGACTTAATCGGNAGTTTCCTC
TTACTTCTGTTTTCCAGTCCCCTCCCACAAGGGCAGCGTCTGACAAGGA

Query= MSMg01no138_f03.g1 MSMg01no138_f03.g1 CHROMAT_FILE:
MSMg01no138_f03.g1 PHD_FILE: MSMg01no138_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:19 2005
         (515 letters)



>mm_chr2_115833033_115833946
          Length = 914

 Score =  926 bits (479), Expect = 0.0
 Identities = 506/515 (98%), Gaps = 1/515 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caattccaggacaccggcctcgggtactcatttgtcgttatgctacagatagagattgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattccaggacaccggcctcgggtactcatttgtcgttatgctacagatagagattgtg 260

                                                                       
Query: 61  tggcaatgaatttagacacaaactcaagagctggcaagatggccattaggaacagacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaatgaatttagacacaaactcaagagctggcaagatggccattaggaacagacacc 320

                                                                       
Query: 121 tggcactaagcctgacatccagggtttgatccatgaaactcagagcataaaaggagagaa 180
           |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggcactaagtctgacatccagtgtttgatccatgaaactcagagcataaaaggagagaa 380

                                                                       
Query: 181 gtaattcccacagtctgacctctacaagaactggatggcatggccatttatctctctcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaattcccacagtctgacctctacaagaactggatggcatggccatttatctctctcaa 440

                                                                       
Query: 241 cctaatatatacacacaattctttaataacataaaaagagagagaaacctgagacaagaa 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 cctaatatatacacgcaattctttaataacataaaaagagagagaaacctgagccaagaa 500

                                                                       
Query: 301 ataattaggtgcatatctttcccaaaacaagagtatctataaggctacattttcaagaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ataattaggtgcatatctttcccaaaacaagagtatctataaggctacattttcaaggca 560

                                                                       
Query: 361 ccattgaagatgctaaccttttaccccaccctgttgctttggtgtgctctttctcttcat 420
           |||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 561 ccattgaagatgctaaccctttaccccgccctgttgctttggtgtgctctt-ctcttcat 619

                                                                       
Query: 421 ttttatccccactccaactttctactctttgctagcaagttcctattcagcctccaagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttttatccccactccaactttctactctttgctagcaagttcctattcagcctccaagcc 679

                                              
Query: 481 ctagcgaaagagaggtctcttttttagaggtgctc 515
           |||||||||||| ||||||||||||||||||||||
Sbjct: 680 ctagcgaaagaggggtctcttttttagaggtgctc 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 914
Length adjustment: 10
Effective length of query: 505
Effective length of database: 904
Effective search space:   456520
Effective search space used:   456520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)