BAC Information

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BAC

Clone NameMSMg01-138L14
Chromosome2 (Build37)
Map Location 91,445,912 - 91,446,177
singlet/doubletsinglet
Overlap geneCkap5
Upstream geneNup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941
Downstream geneF2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz, Creb3l1, Phf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138L14.T7 (MSMg01no138_l14.b1)MSMg01-138L14.TJ (MSMg01no138_l14.g1)
ACCAG344319AG344320
length743744
length of high quality
(start - end)
224 (84 - 307)268 (80 - 347)
definitionCHROMAT_FILE: MSMg01no138_l14.b1 PHD_FILE: MSMg01no138_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:51 2005CHROMAT_FILE: MSMg01no138_l14.g1 PHD_FILE: MSMg01no138_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCCCCTNTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGA
GAGAGCCGCGGAATTCACTGACTGACCAAACTAGTAACGTCAATGAGCTC
CAGTTTCAGTGAGAAGCCCTGTCACAAAAATAAGGTGAAGGGCAATTGAG
GAAGATAACCCAGCATCTACCTCTGGCTTCCACACATATACACTGCGGTG
CTTTGAATGAAAATGGACCCCACAAGCTCATGCATTTAATTCATGCTCAG
TGGAACTGTTTTAGGAAGGATTAGGTGGTGTGGGCTTGTTGAGGAAGATG
TGTCACTGGTAGTAAGCATTTAGTTTTTTTTTTTTTTTCTAGGCCAAGGG
GTGATCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCTCATGTTTGTCCTT
CATATACAATTCCTCACTTACTGTTCCCGCACCATGTTATCTCCCCACCA
CGGATGGTCTTGAACTTACCCTCTTTTCCTCGTAACCTACCCCCCCAACA
GACTGATATTCCTTCCTTGCACATTTGCCTTTCCCTCTTGTAGCTACCTT
TCCTATTACTTACAGAAACATAACTTTTGTTCTTTTTTCTCTTTGTTCCA
CCTTACTTTTACTTAACATTTCCCTGCCCCCATTACATACACTCTATTTA
TACCCCACCACCACTTCCTCCTATTTCCTCTCAATACCGACCCTTCTATT
CTCCCCTTTTTTTACCACCCCGATATCTCCTCCACCTTATCTA
TCCATTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTGTAGACCAGGCTGGCC
TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGACTAAAG
GTGTGTGCCACCACGCCCGGCTAGAAGTATTCTTTTTAATGAATTGAACA
TTCAAGTGTAGAAATTATTCTCTGAAGTACACAGTAAGGTTCTTAGAATA
GAATCTCTAGCTAATTCATTGAATACTATCTTGCTCAGTAATAAATGTGT
GTGTGTGTATATATGTGTGTGTGTATATATATATATAATGATTGAATCCC
TCCCCCCTCAACTTCTTTTTCTCTCCCCTCCCCCCTCCATCTAAATTCTT
ATTCTTCCCCCCCCCTTTTCCTTTACCCTACTTCCTTTACCCCCTTCTCT
CTATATCTTCCTCACCCACCTATCTACCTATACCCTATCTTCTTTATTCA
TTCTCTTTTACATTTCCTTCCCTCCATTTTTCTTCCCCTATTTACCTACT
CCTATACATTTCCACACCCATATCATCATTTTTCACACCCATCCATTACT
CCCTCATTCCCTATCCTTTATATTCACTCCTATTCTTTCCTTACCTCTCA
TTATATTCCATTTCTCTCCTTTTTTTTCTTTTATCCTTTTTCCTCATCCC
TCCTCCTCCTTTTTTCTTACATTTTTATTTTCCCCCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_l14.g1 MSMg01no138_l14.g1 CHROMAT_FILE:
MSMg01no138_l14.g1 PHD_FILE: MSMg01no138_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:51 2005
         (268 letters)



>mm_chr2_91445712_91446379
          Length = 668

 Score =  468 bits (242), Expect = e-136
 Identities = 257/266 (96%), Gaps = 8/266 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctcccaagtgc 260

                                                                       
Query: 61  tgggactaaaggtgtgtgccaccacgcccggctagaagtattctttttaatgaattgaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggactaaaggtgtgtgccaccacgcccggctagaagtattctttttaatgaattgaac 320

                                                                       
Query: 121 attcaagtgtagaaattattctctgaagtacacagtaaggttcttagaatagaatctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcaagtgtagaaattattctctgaagtacacagtaaggttcttagaatagaatctcta 380

                                                                       
Query: 181 gctaattcattgaatactatcttgctcagtaataaatgtgtgtgtgtgt----atat--- 233
           |||||||||||||||||||||||||||||||||||||||||||||||||    ||||   
Sbjct: 381 gctaattcattgaatactatcttgctcagtaataaatgtgtgtgtgtgtgtgtatatgta 440

                                     
Query: 234 -atgtgtgtgtgtatatatatatata 258
            |||||||||||| ||||||||||||
Sbjct: 441 tatgtgtgtgtgtgtatatatatata 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)