Query= MSMg01no139_a09.b1 MSMg01no139_a09.b1 CHROMAT_FILE:
MSMg01no139_a09.b1 PHD_FILE: MSMg01no139_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:16 2005
(659 letters)
>mm_chr2_138425416_138426475
Length = 1060
Score = 1239 bits (641), Expect = 0.0
Identities = 653/657 (99%), Gaps = 1/657 (0%)
Strand = Plus / Minus
Query: 4 ggaattctttgcacacacagtgatataccacctcacatcattctgaagacttacgaggca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ggaattctttgcacacacagtgatataccacctcacatcattctgaagacttacgaggca 902
Query: 64 tatgttgcaatcatgggatattaaaaataataataaaaaaacatgagcagattaccatgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 tatgttgcaatcatgggatattaaaaataataataaaaaaacatgagcagattaccatgg 842
Query: 124 ccgtttgaaccacgatacctgctgtttgtatatccccagctggcccatctctgacggcac 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ccgtttgaaccacgatacccgctgtttgtatatccccagctggcccatctctgacggcac 782
Query: 184 atcttctgtattctaatttttaggactttgaactaaagagataatgattggcttaccacc 243
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 781 atcttctgtattctaatttttaggactttgaactaaaaagataatgattggcttaccact 722
Query: 244 cggtgagctagatgtttcattttgttgtttcttcacagcctggggcagtgtcaatctggt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cggtgagctagatgtttcattttgttgtttcttcacagcctggggcagtgtcaatctggt 662
Query: 304 tggtctctctctccaaacccaactcttcccaggtgagtagctctaattagtgcaccagag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tggtctctctctccaaacccaactcttcccaggtgagtagctctaattagtgcaccagag 602
Query: 364 aaaggtctaatttaggtgcaggtgtcctgggcaagtaagtcaaggagattttgccatctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaaggtctaatttaggtgcaggtgtcctgggcaagtaagtcaaggagattttgccatctg 542
Query: 424 gcatcccataggtgtgtgttggtggctattgaggatgagtctgaccgttcatattttcaa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gcatcccataggtgtgtgttggtggctattgaggatgagtctgaccgttcatattttcaa 482
Query: 484 -tttttttcttagtttcaatttcccataccattggattatataccaaactaggaagaatt 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttttttttcttagtttcaatttcccataccattggattatataccaaactaggaagaatt 422
Query: 543 aaggtatatttgcttcctgcttcctcccagacatttttgcagatacactgtctttgagcg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaggtatatttgcttcctgcttcctcccagacatttttgcagatacactgtctttgagcg 362
Query: 603 atcacatcaccgaaaacctagtgttaccctgctagactaggaaataaactcctctcg 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 atcacatcaccgaaaacctagtgttaccctgctagactaggaaataaactcctctcg 305
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_a09.g1 MSMg01no139_a09.g1 CHROMAT_FILE:
MSMg01no139_a09.g1 PHD_FILE: MSMg01no139_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:16 2005
(628 letters)
>mm_chr2_138305157_138306183
Length = 1027
Score = 1166 bits (603), Expect = 0.0
Identities = 622/629 (98%), Gaps = 3/629 (0%)
Strand = Plus / Plus
Query: 1 ttgccacattctgcttcacagtgtttcttactggaattagctacagacccctttcttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgccacattctgcttcacagtgtttcttactggaattagctacagacccctttcttttc 260
Query: 61 tgccaggatgaggggagtatagtaactaataatataatctacactctattccttaggtga 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tgccaggatgaggggagtatagtaactaataatataatctacactctactccttaggtga 320
Query: 121 gaa-ctggtttaggaattcagaatgtttcagatcttttacactgcaccaatatttttctt 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaactggtttaggaattcagaatgtttcagatcttttacactgcaccaatatttttctt 380
Query: 180 ccattagacaaatgccatttcccttagtagcaatttagtcattaccccataatataaaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccattagacaaatgccatttcccttagtagcaatttagtcattaccccataatataaaag 440
Query: 240 aagtgtgaaatctgtcacaaggaagatggtgttgtgacacaaagaaagatcctctgggag 299
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 aagtgtgaaatccgtcacaaggaagatgatgttgtgacacaaagaaagatcctctgggag 500
Query: 300 gtttaaccaggttttctacaagattgaaatgaatgtgacattatgttcatattcataatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttaaccaggttttctacaagattgaaatgaatgtgacattatgttcatattcataatt 560
Query: 360 aaatttattcctttttaatgtgtgtgtgaatgtgtgctcatcgagatgaagaaaatgaga 419
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 561 aaatttattcctttttaatgtgtgtg--aatgtgtgctcattgagatgaagaaaatgaga 618
Query: 420 aaatttggcctgactgtagattgaggacagaccaatcttaaccttaaatatagcacctta 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaatttggcctgactgtagattgaggacagaccaatcttaaccttaaatatagcacctta 678
Query: 480 aatgtgtgggccatgttgtaatttcagtttcaggcactcgatgtgatgctgtaaagtata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aatgtgtgggccatgttgtaatttcagtttcaggcactcgatgtgatgctgtaaagtata 738
Query: 540 gatgtgacttttggcttgggctaataatagatagctaatggactcccccaggagaattgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gatgtgacttttggcttgggctaataatagatagctaatggactcccccaggagaattgt 798
Query: 600 aattacctttaaatgcctttcatctgtgc 628
|||||||||||||||||||||||||||||
Sbjct: 799 aattacctttaaatgcctttcatctgtgc 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1027
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1017
Effective search space: 628506
Effective search space used: 628506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
