Query= MSMg01no139_b03.b1 MSMg01no139_b03.b1 CHROMAT_FILE:
MSMg01no139_b03.b1 PHD_FILE: MSMg01no139_b03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:20 2005
(671 letters)
>mm_chr2_4506372_4507445
Length = 1074
Score = 1201 bits (621), Expect = 0.0
Identities = 653/666 (98%), Gaps = 5/666 (0%)
Strand = Plus / Minus
Query: 8 ttcaaataccatgtggacatggtatagcttcatgaaggacggtcaggggagtggactctc 67
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 ttcaaataccatgtggaaatggtatagcttcatgaaggacggtcaggggagtggactctc 813
Query: 68 ctgaacaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaattttta 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ctgaacaagaacactgtcatttctgattgtcttaagacatgtcacaccagccaattttta 753
Query: 128 tatgctttacaaaagggagggggagaataaagtttaagttaatattaataatttcaatca 187
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 752 tatgctttac-aaagggagggggagaataaagtttaagttaatattagtaatttcaatca 694
Query: 188 tgacttaaattttctcttgtctactgaaagatgctggtttttgcttattgcatatataat 247
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 693 tgacttaaattttctcttgtctactgaaatatgctggtttttgcttattgcatatataat 634
Query: 248 atctgttctttgcaaaatatatgaaaatatagacaggtataataataattacatatcaca 307
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 atctgttctttgaaaaatatatgaaaatatagacaggtataataataattacatatcaca 574
Query: 308 ggtaatataatagtacacatgaacacacataccaactagaattttgttctattttatctg 367
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ggtaatataataatacacatgaacacacataccaactagaattttgttctattttatctg 514
Query: 368 agtgctatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgca 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agtgctatatgctgagaaaacgtttctcctaatggaaagaatacaatatagagtgatgca 454
Query: 428 ----tagttttcaagagacgtaaatgtactttccttgctttcctggctagcacgtctgca 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 453 tagttagttttcaagagacgtaaatgtacattccttgctttcctggctagcacgtctgca 394
Query: 484 tgattcaaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tgattcaaacagcaggcttctagataggaggcaactgttgaagataccaactggaggaat 334
Query: 544 ttagcttanaccaaaagattaatttctaggttgcagtgtctggctcctggagcaggtttc 603
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttagcttaaaccaaaagattaatttctaggttgcagtgtctggctcctggagcaggtttc 274
Query: 604 ttatactgagcttggtagctctttctacattgatgcgttatagagtgtattgatggcttc 663
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 ttatactgagcttggtagctctttctacattgatgggttatagagtgtattgatggcttc 214
Query: 664 cctaga 669
||||||
Sbjct: 213 cctaga 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1074
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1064
Effective search space: 703304
Effective search space used: 703304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_b03.g1 MSMg01no139_b03.g1 CHROMAT_FILE:
MSMg01no139_b03.g1 PHD_FILE: MSMg01no139_b03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:20 2005
(609 letters)
>mm_chr2_4382716_4383725
Length = 1010
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%), Gaps = 1/610 (0%)
Strand = Plus / Plus
Query: 1 cctccgaggccag-aaaaaaaagggggcggatatgccatcatttctaccgctcttggaag 59
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccgaggccagaaaaaaaaaggaggcggatatgccatcatttctaccgctcttggaag 260
Query: 60 tgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccatcca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaccttttcttctgcctcactgccatggtcactcctaaagagtaggaatcacccatcca 320
Query: 120 ctaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctggac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggtcttgggaccctcagcatgtagagtgggtgggcacattagcaggcaaagctggac 380
Query: 180 acagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggacaaca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagtgcctgcagcggtgtcatgaggggaggcaagtggcccatcagctcaggggacaaca 440
Query: 240 tgcaccttgcagtaacgagacaagattgctcctggcaatcttggaatatacctataatgc 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcaccttgcagtaaggagacaagattgctcctggcaatcttggaatatacctataatgc 500
Query: 300 tggcatttctggggagagccagagtctcctttcgaggggggggggttcttagtcttatta 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcatttctggggagagccagagtctcctttcgaggggggggggttcttagtcttatta 560
Query: 360 ataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttcatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataaaagattttattaatctcttaataaaactttaagggaagttcagggatgatttcatt 620
Query: 420 gaaatttgagagaaaaacaataggtcaggtttgctgaaaaatctcaggagctgccaggaa 479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaatttgagagaaaaacaacaggtcaggtttgctgaaaaatctcaggagctgccaggaa 680
Query: 480 tataagatggggttgggggtgggcatatcttttaagtcaagcatgaagatcagcgagagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tataagatggggttgggggtgggcatatcttttaagtcaagcatgaagatcagcgagagg 740
Query: 540 gtgagaaagtccagtgtcagcgagagcatgtgcaggctgaaggctagtatttagagggaa 599
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtgagaaagtccagtgtcagggagagcatgtgcaggctgaaggctagtatttagagggaa 800
Query: 600 gggaaagact 609
||||||||||
Sbjct: 801 gggaaagact 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
