Query= MSMg01no139_f15.b1 MSMg01no139_f15.b1 CHROMAT_FILE:
MSMg01no139_f15.b1 PHD_FILE: MSMg01no139_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:43 2005
(617 letters)
>mm_chr2_139487205_139488222
Length = 1018
Score = 1127 bits (583), Expect = 0.0
Identities = 607/615 (98%), Gaps = 4/615 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcatgttttcagcctccactcaagagccttttgcctattgaacattactaaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcatgttttgagcctccactcaagagccttttgcctattgaacattactaaaa 264
Query: 65 gaaaaatccaagctagcctgataggcaatgagacacctagagctctgtggcccacactta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaaatccaagctagcctgataggcaatgagacacctagagctctgtggcccacactta 324
Query: 125 ggcccaacagcacctagcctccattgaacctgattatagttgcatggtgagtaactcaca 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcccaatagcacctagcctccattgaacctgattatagttgcatggtgagtaactcaca 384
Query: 185 aacttgggaaacatattgttttgacacattcaattttaggat-gctttgtgttacgttat 243
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 385 aacttgggaaacatattgttttgacacattcaattttaggattgctttgtgttacattat 444
Query: 244 ttatattagttaattttctgctactgtgattaaaaataccatgactaaggcaacttaggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttatattagttaattttctgctactgtgattaaaaataccatgactaaggcaacttaggg 504
Query: 304 aagaaacagtttattttggcttatgaggctccagacgggtacaagtctatcctagcagga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaacagtttattttggcttatgaggctccagacgggtacaagtctatcctagcagga 564
Query: 364 gagcatggcagcaagctacatgcagaacagcagaagtgggacggtgagaagtcacatatt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagcatggcagcaagctacatgcagaacagcagaagtgggacggtgagaagtcacatatt 624
Query: 424 gtaaaaccataagcctgaagcgaaagttg-gctggaaatggggaacagctattaactctc 482
||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 625 gtaaa-ccataagcctgaagcgaaagt-gagctggaaatggggaacagctattaactctc 682
Query: 483 aaaacctacctccagttgatgcacttcctccaataagcccacacatggtgccaccaactg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaacctacctccagttgatgcacttcctccaataagcccacacatggtgccaccaactg 742
Query: 543 ggagccaagtgctcaagtgtctgagcctaaggagacatttctcatttaagccatcacatg 602
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggagccaagtgctcaaatgtctgagcctaaggagacatttctcatttaagccatcacatg 802
Query: 603 ctagtcagacagaca 617
|||||||||||||||
Sbjct: 803 ctagtcagacagaca 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_f15.g1 MSMg01no139_f15.g1 CHROMAT_FILE:
MSMg01no139_f15.g1 PHD_FILE: MSMg01no139_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:43 2005
(612 letters)
>mm_chr2_139605989_139607000
Length = 1012
Score = 1104 bits (571), Expect = 0.0
Identities = 601/611 (98%)
Strand = Plus / Minus
Query: 1 tacagttgagatggagcaaagcacttttgtgaaaaaacaaaacaagaaaaccaactatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tacagttgagatggagcaaagcacttttgtgaaaaaacaaaacaagaaaaccaactatga 752
Query: 61 agagtgactcaagataaaacacatacttgaataatcctgtgaagaaaattgaatccatgc 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 751 agagtgactcaagataaaacgcatacttgaataatcctgtgaagaaaattgaatccatgc 692
Query: 121 tttaaaatcttctataaaatgaattctatagttagaccagtttacaagcatactccacta 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 691 tttaaaatcttctataaaatgaattctatagttagaccattttacaagcatactccacta 632
Query: 181 attattgaaaagagatggagtgcttggtctatgttctagttctgtaaataagagaagaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 631 gttattgaaaagagatggagtgcttggtctatgttctagttctgtaaataagagaagagt 572
Query: 241 catattcaagttacattcaagttctacaaatatgagaagagaacacattcaagtttaact 300
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 catattcaagtcatattcaagttctacaaatatgagaagagaacacattcaagtttaact 512
Query: 301 tataaatatcttgatgtcacagttaaagacattagaggatatgagtgctacagaagttat 360
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 cataaatatcttgatgtcacagttaaagacactagaggatatgagtgctacagaagttat 452
Query: 361 ctagaaacaaaattgcggtggatggaggtctaaggtggggtgtttacctagcctgttcaa 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctagaaacaaaatggcggtggatggaggtctaaggtggggtgtttacctagcctgttcaa 392
Query: 421 agccttagcccaaacatttttaaaccataaggctgatacactgtaatatctttagaacgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agccttagcccaaacatttttaaaccataaggctgatacactgtaatatctttagaacgg 332
Query: 481 ctaaacctgatttaaagatgtacattaaaggtgcaatgatcaagatgtagtgctggggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctaaacctgatttaaagatgtacattaaaggtgcaatgatcaagatgtagtgctggggca 272
Query: 541 gatagacctgcagattgcaagacaggattaagcatccagagataggttcaaaaatctggc 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 271 gatagacctgcagattgcaagacaggattaagcgtccagagataggttcaaaaatctggc 212
Query: 601 aaaggtgctaa 611
|||||||||||
Sbjct: 211 aaaggtgctaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
