Query= MSMg01no139_g12.b1 MSMg01no139_g12.b1 CHROMAT_FILE:
MSMg01no139_g12.b1 PHD_FILE: MSMg01no139_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:48 2005
(634 letters)
>mm_chr2_19802688_19803721
Length = 1034
Score = 1087 bits (562), Expect = 0.0
Identities = 616/638 (96%), Gaps = 8/638 (1%)
Strand = Plus / Plus
Query: 5 gaattctggactacctatgcattcaaaaagctgagacaagcaaaacaagcaagcaatcaa 64
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 197 gaatactggactacgtatgcattcaaaaagctgagacaagcaaaacaagcaagcaagcaa 256
Query: 65 gca-------aa-caaacaaacaatctgcttgaacatgttaaagtggttagttctcactg 116
||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gcaagcaagcaagcaaacaaacaatctgcttgaacatgttaaagtggttagttctcactg 316
Query: 117 ttgccagccagaatacaaactatactttggaagttctggatagagaggttatacattctt 176
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 317 ttgccagacagaatacaaactatactttgggagttctggatagagaggttatacattcct 376
Query: 177 gcataaggagtgaagactcttatccttacctgtggcactgtttgaaacatgtctgatata 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gcataaggagtgaagactcttatccttacctgtggcactgtttgaaacatgtctgatata 436
Query: 237 taaggaaaaacagacccaacagatcaattggttttatagcaatctgctacatctgagaac 296
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 437 taaggaaaaacagacccaagagatcaattggttttatagcaatctgctacatctaagaac 496
Query: 297 aaaactcaagaactatatcagtaggaaaatgtcttgtgtccactatgtcagaatctttaa 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 497 aaaactcaagaactatatcagtaggaaaatatcttgtgtccactatgtcagaatctttaa 556
Query: 357 cagctggcatctaatgaaaaagcacaaagtatacagagaagtggaaaatttttacttaca 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cagctggcatctaatgaaaaagcacaaagtatacagagaagtggaaaatttttacttaca 616
Query: 417 ataaatctagaaatataatctcaatggacccagaactgtaacagatgttggattaacaga 476
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 617 ataaaactagaaatataatcacactggacccagaactgtaacagatgttggattaacaga 676
Query: 477 ggaagacatgaagagttgctataacaatatcccagatgttcaaaaagtgagagagagaat 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ggaagacatgaagagatgctataacaatatcccagatgttcaaaaagtgagagagagaat 736
Query: 537 tgtacaaggaggatggaataaataaaacctctgtattcatgaagataaactaaaatatca 596
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 737 tgtacaaggaggatggaataaataaaacctctgtatttatgaagataaactaaaatatca 796
Query: 597 aacgaaaatgttcaccatatacaagattggtatattag 634
||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aacgaaaatgttcaccatatacaagattggtatattag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_g12.g1 MSMg01no139_g12.g1 CHROMAT_FILE:
MSMg01no139_g12.g1 PHD_FILE: MSMg01no139_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:48 2005
(634 letters)
>mm_chr2_19947667_19948697
Length = 1031
Score = 1187 bits (614), Expect = 0.0
Identities = 628/634 (99%), Gaps = 3/634 (0%)
Strand = Plus / Minus
Query: 1 ccccttatcagcaacaatgaggtcagcaaaaacaatcagtgcaggaaaatggataatgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ccccttatcagcaacaatgaggtcagcaaaaacaatcagtgcaggaaaatggataatgaa 772
Query: 61 cacctcaaggaggaatctggcaacagctggaaaggcttggtgtctcactcttgacgctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 cacctcaaggaggaatctggcaacagctggaaaggcttggtgtctcactcttgacgctgt 712
Query: 121 tctcactaaaggagtgaattaaaagcaacttggaaagttagctttcagaaagcctcaaag 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 711 tctcactaaaggagtgaattaaaaacaacttggaaagttagctttcagaaagcctcaaag 652
Query: 181 tctgatctttctgagtgcaaggatattgattaaattgaagaagatttgaaagtccaccac 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 651 tctgatctttctgagtgcaaggatattgattaaatt---gaagatttgaaagtccaccac 595
Query: 241 ttcctctcggcggctgttgcatactttgaaaaacaatgatttcatagtaacagtcaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttcctctcggcggctgttgcatactttgaaaaacaatgatttcatagtaacagtcaaaat 535
Query: 301 gcctttcatgaatgactgttaaaattaatttcacctcatttgatccatgggaaggaaggt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcctttcatgaatgactgttaaaattaatttcacctcatttgatccatgggaaggaaggg 475
Query: 361 caaacaaacctctgttagatctgcaccaacagctcaaagtatggcttctgcttctctgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 caaacaaacctctgttagatctgcaccaacagctcaaagtatggcttctgcttctctgtt 415
Query: 421 cctgcgctgggaggcaggtcagggagaggaaactgtggaggcagtcacagcagcactcag 480
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cctgtgctgggaggcaggtcagggagaggaaactgtggaggcagtcacagcagcactcag 355
Query: 481 gtcgaaatgacagctgcccctgcacagacattttatctgcaaagtagtatattgttagta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 gtcgaaatgacagctgcccctgcacagacattttatctgcaaagtagtatattgttagta 295
Query: 541 actgcccgcatgttccaggcagcagaatgattggccaaggcatttgttgctaagaacatg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgcccgcatgttccaggcagcagaatgattggccaaggcatttgttgctaagaacatg 235
Query: 601 gtcagtatacctgtgtttaacagtgcaaaatctt 634
||||||||||||||||||||||||||||||||||
Sbjct: 234 gtcagtatacctgtgtttaacagtgcaaaatctt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1031
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1021
Effective search space: 637104
Effective search space used: 637104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
