BAC Information

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BAC

Clone NameMSMg01-139G22
Chromosome2 (Build37)
Map Location 91,857,484 - 91,857,955
singlet/doubletsinglet
Overlap geneCreb3l1
Upstream geneLOC279067, Rapsn, Psmc3, Slc39a13, Sfpi1, Mybpc3, Madd, Nr1h3, Acp2, Ddb2, Pacsin3, Zfp289, 1110051M20Rik, Lrp4, LOC619941, Ckap5, F2, Zfp408, Arhgap1, D2Ertd391e, LOC100043179, D230010M03Rik, D030051N19Rik, Chrm4, Mdk, Dgkz
Downstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139G22.T7 (MSMg01no139_g22.b1)MSMg01-139G22.TJ (MSMg01no139_g22.g1)
ACCAG344834AG344835
length723728
length of high quality
(start - end)
471 (42 - 512)475 (73 - 547)
definitionCHROMAT_FILE: MSMg01no139_g22.b1 PHD_FILE: MSMg01no139_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:50 2005CHROMAT_FILE: MSMg01no139_g22.g1 PHD_FILE: MSMg01no139_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGAATTTGCGGCGCTATACGACTCCTATATTCAGAAATCCGCGGAATTC
GCAACTTTTTCATACCCTTACTGTGACATGATTCACCTATTTGAAGATGT
AAGTCAGTGGCTCTTAAAAGAATAAAGCAGCCGGGCAGTGGTGGCACACG
CCTTTAATCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGA
GGCTAGCCTGGTCTACAAAGTGAGTTCCAGGATAGCCTGAGCTATACAGA
GAAACCCTGTCTCGAAGAAGGAAAACACAAAACAAAACAAAACAAAACAG
CAAAACCTTAATGGTTTGGCTTTATGGTATTTTAATTACATCACAATATG
ATGGTCAGTAAAGGTACAAACTAAACCGGGCTGTGGTGATGCATGCCTTT
TAATCCCAGCACGTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGC
CAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGACTACACAGAGAA
ACCTTATCTCAAAAAAACAAAAACAAACAAACAAAAAAACAAAAAGAATA
AAGCAACCATTTCTACTCTCTTTATAGTTCCAGACATTTTTATCACCAAA
ACACCCTTTAGGCATTAACAGCCACTTTATTCTTCCCCCTCCTTTTCCTT
TCTTTACTTCCTTCTAGCCCCAGGCAACCATTAATGTACAGCTCTGGTTT
TGTAGCTTTGCCCATTCCAGGTA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTCCCAACTGGGTCCTCTCCACCTCCTG
CAATCTCTATACTCGGGACCTTCAGAGCATCTATCAGGGACCTGGTTTGC
CCTTGAACCTCTCTGGAGAAACCAGTTCCAGATGTTGGAGAACAGGCTGT
TCTTCTGGAAGTCTCACCACTCCAGGGGGGCAGGATGGAGGAGGAAGATT
TGGGTGGAGTTGAGTGAAGACTGTGAGCGTTGCTTTGGCTGGAAGTCTGT
GTAACCCCCCTTGAGCAGACCCATTGAAGTCACAGTCAGTGACAGGACCC
TAAGCCAGGAGCAGGAAAAATGTGGAGGTTGGAAAGTCTGGCTCAGAAGC
TGGGAGGAATAGAATATGACCCAGAACCTTGACCCTCAAAGGGAGTGTGT
CATGGATATTGGTTTCCCTGCAAAGTACAAGTCCTTGATCCCTGAGAACT
GGACATACCATATCATCAATGAGTTTGACTTGACTGAGTTGAGTAGCCAG
GCTCAGTCTGCTCCTCCCCCAGCTCTCCAGGGACAGAGAATTCAATGATG
CTTCCTTGGCCCTTGGCTGTTGGCCCATAAACCATCTTCACCCTTCACAG
AGAGGCTGACTCATCTTTTATGTTATGCGTGCTCCAACCGATCATCTGGT
ATGCAACAGCCGCTTCCTCTTTTCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_g22.g1 MSMg01no139_g22.g1 CHROMAT_FILE:
MSMg01no139_g22.g1 PHD_FILE: MSMg01no139_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:50 2005
         (475 letters)



>mm_chr2_91857284_91858158
          Length = 875

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcccaactgggtcctctccacctcctgcaatctctatactcgggaccttcagagcatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ctcccaactgggtcctctccacctcctgcaatctctatactcgggaccttcagagcatct 613

                                                                       
Query: 61  atcagggacctggtttgcccttgaacctctctggagaaaccagttccagatgttggagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 atcagggacctggtttgcccttgaacctctctggagaaaccagttccagatgttggagaa 553

                                                                       
Query: 121 caggctgttcttctggaagtctcaccactccaggggggcaggatggaggaggaagatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 caggctgttcttctggaagtctcaccactccaggggggcaggatggaggaggaagatttg 493

                                                                       
Query: 181 ggtggagttgagtgaagactgtgagcgttgctttggctggaagtctgtgtaacccccctt 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 492 ggtggagttgagtgaagactgtgagcattgctttggctggaagtctgtgtaacccccctt 433

                                                                       
Query: 241 gagcagacccattgaagtcacagtcagtgacaggaccctaagccaggagcaggaaaaatg 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagcagacccagggaagtcacagtcagtgacaggaccctaagccaggagcaggaaaaatg 373

                                                                       
Query: 301 tggaggttggaaagtctggctcagaagctgggaggaatagaatatgacccagaaccttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggaggttggaaagtctggctcagaagctgggaggaatagaatatgacccagaaccttga 313

                                                                       
Query: 361 ccctcaaagggagtgtgtcatggatattggtttccctgcaaagtacaagtccttgatccc 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 312 ccctcaaagggagtgtgtcatggatattggtttccctgcaaagttcaagtccttgatccc 253

                                                               
Query: 421 tgagaactggacataccatatcatcaatgagtttgacttgactgagttgagt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgagaactggacataccatatcatcaatgagtttgacttgactgagttgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)