BAC Information

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BAC

Clone NameMSMg01-139J08
Chromosome2 (Build37)
Map Location 98,983,903 - 98,984,105
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042886
Downstream geneLOC621386, LOC668702
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139J08.T7 (MSMg01no139_j08.b1)MSMg01-139J08.TJ (MSMg01no139_j08.g1)
ACCAG344945AG344946
length756750
length of high quality
(start - end)
208 (45 - 252)105 (78 - 182)
definitionCHROMAT_FILE: MSMg01no139_j08.b1 PHD_FILE: MSMg01no139_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:02 2005CHROMAT_FILE: MSMg01no139_j08.g1 PHD_FILE: MSMg01no139_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATGCTTCATCACCATTAGCATAGGTAAACAAATGGAATACAACCTC
AACAAAGGAGGGAACTCACATTCTCTCTGCTCTACTGCCATATAATTTGC
ATTGAGTAATACAAAGGGATATCTGGCAATGAGGGTTTTGTTGCTGTTGT
TGTTGTTGTTGTTATACTAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TCGTCTCTACACATACCCCCCCCCATTATTTTTTTATATACTCCCTCCAC
ATCCCCACAAACAAACCACCAAAATTTTTTTTTTCNCCATCTTCTCTTAC
CTTACTCCCCCTCTTTTTTATTTTTTTCCCCCCACCCTCAACCCTATTAA
TTTTAATCTCCATATTTTTTTCCCCCCCCCTTTTAATTTTTATTTTTTTT
TTTGTCCCTCCCCCTGTTTCCCTCCTCTCTCTTTTTTTTTCCTCCTCCGT
TCACTATTCCCCTCTCCTTCATATTTCCCCCCTTCTATTCCCTGTTACTA
TACTTCTCTCTAATTTACCTCTTAACTCCCTTCCTACCTATTATAATCTT
CTCTTCATTTATACTCATAACTCCACCTTCTTTTTTTTACTTTTTCTATC
TTTTTTATATTACATCTTCTGCATCTCCCCCCCCCCGCATATATATATAT
ATTCTTATTTTCTTTTCTCCCCCCTCTTATCTTCCTCTCCCTTAAATTAT
ATTTCA
NCCCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGGTATTTAGCCTTGTTTCAA
AACTTATTAAAAATGTCTTTTTAAAAGTGTCTTTATTTATGTTTATAATT
AGTTAGTTTGTGTGTGTGTGTGTGTGTGTGCGTCAACATACCCAATGTCA
TCCCACCTGAAAATGCTATACCTCACGCACAACATTCTATCGCACCTCCA
TTTCATACCCACAACCATGCTCATCAATTCACAGCCACCACCCCCCACAC
CCATTATAATCTCCCCCCCCCACACCCCCAACCCCCCCTCTCTCTACTTA
CTCATCCAAATCCCCTAACCCCCCTTTTCTAACCCCATCGCCCCCCCCCC
CCCCCCCCCCTTTCCACACCCCTCTCACCCCACATAATTCCTTCACCCCC
CCCCCCTTTACCCCCCCCAATCCCACCCCCCCCCCCTCTATAACCCCACA
CTTAATCTCCCCCCACTATATCTCCACCCCCCCCCCCCCCCCCCCCCCTT
CCCCCCCCCCTCATTATACCCAACACAACCCAACATCCATAAATCCCCAC
CCCCCCCCCCCTCCCCCAATATTCCCCACTACTACATCCCCCACCCCCCC
CCTCCTTTCCCCCCCTCCCCCTCCCCTCTCTTATCTATTCCCCCCCCCCC
CCCCCTTCTATTATCTACCCCTCCCCCCTCCCTCTCTTACATCCCCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_j08.b1 MSMg01no139_j08.b1 CHROMAT_FILE:
MSMg01no139_j08.b1 PHD_FILE: MSMg01no139_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:02 2005
         (208 letters)



>mm_chr2_98983763_98984370
          Length = 608

 Score =  385 bits (199), Expect = e-111
 Identities = 202/203 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgcttcatcaccattagcataggtaaacaaatggaatacaacctcaacaaagg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaattcatgcttcatcagcattagcataggtaaacaaatggaatacaacctcaacaaagg 284

                                                                       
Query: 65  agggaactcacattctctctgctctactgccatataatttgcattgagtaatacaaaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agggaactcacattctctctgctctactgccatataatttgcattgagtaatacaaaggg 224

                                                                       
Query: 125 atatctggcaatgagggttttgttgctgttgttgttgttgttgttatactaacgtgtgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 atatctggcaatgagggttttgttgctgttgttgttgttgttgttatactaacgtgtgtg 164

                                  
Query: 185 tgtgtgtgtgtgtgtgtgtgtgt 207
           |||||||||||||||||||||||
Sbjct: 163 tgtgtgtgtgtgtgtgtgtgtgt 141


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 608
Length adjustment: 9
Effective length of query: 199
Effective length of database: 599
Effective search space:   119201
Effective search space used:   119201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)