AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGCCCTGTCTCAGTTTATCTTTTATGTGTAACAGTGGTTTAGCC
CATCCTTCAAATTTGGCAGCATCACAATCCTGACAGAAAGATATTACAAA
AGAAGAAGCTATTGTAGTGGATTTTTCCTGTCAGATTTTTGAAATGGTGG
ACCCCAAGAAACTGAAATATCATTCTGGAAGTAGAAAAAGACTGACCATG
CTACCCACTCAGATGTGGGATATTATCTCTCAACAAAGACATAGTTACAT
CTTTTCAGGCCACCTTCTAGGAGAAACTGGAGCCAAGACAAGAATGGGCC
CCATAATGGGTGGTACCAAGTCTGGACCACAGAAGCTCAATTGCACATAA
TTTTAGCATGGTATTTAACGTACGCCTTAGGTCAGAATCATAGACTTGAA
AAGCCACTAGAACCTCATAATTTCCAGTGTGGTGATGTGAATTAAGCCTC
CAGTTTCTGCTTTGCATGATTATAAGACTTTTTAATTGAGAAACTTATTT
GGTATATATTGATGGTGTTTTTCATTTTCCCAGCTCTTTCCAGATTCTCC
TCAAACCTATTTAGACATTGGTCATTTCAATTGGCCTATTGAAGATAGGT
AACTGGAAATAGCATATTAGGAATGCCAGAATCCAGGCTCTGACCTTAAC
AACTCCTG

NCCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTGCTTTGTGTTCTCTTCTGAGC
TGAGCACTAAGCAAACATAGAATACAGTTCTACTTTTAAAGTAGGTCTAT
CTGGAGGCTTGCTGCCATTTTTGTCTCCTATAAAATTTCTGTTGCAAAGG
AAGAGAGGATCACAATTTTGTCTGGCAGATTGCGATGGCATGGTGTATTC
TTGGTTATCAAAATCCGTGTACTGTGGGGTTTTTAGTTGGTGAATATTCA
CCGTGTGTGGAAAGCATGGTAATACTATATAATCTCGTTTACCTAAGTGT
ATGTATGCTAGTAGGATCTACAACAACACATCGAGCTGAGCTAAATGTGA
CTGGGTGGCTTTGTTCTTGCCTTTTTGTGTTTTGTTTCTTGTAATGCACA
TATTAAAACATAAACAAAAGCTTCTTTTAAAAGCTTCAAAAAAGGAGGGA
AGAGAGTTTTAAGAGTATATCTCCAGATAAACCTGAGAGGTACCTTAGTT
GTATTATAATGGAAGACAACAAAACAAAGGATATTTGAACAGCTTATATT
GGACTTAAATTTTAAAAAGAATAAAACAAAAAGGACACAGTGCTGAGAGC
AGTAAGAGAACGTGATTCAGGAACAACTGTGGAGGGTCAATATACTCAGA
ACACATTG

Query= MSMg01no139_j21.b1 MSMg01no139_j21.b1 CHROMAT_FILE:
MSMg01no139_j21.b1 PHD_FILE: MSMg01no139_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:04 2005
         (663 letters)



>mm_chr2_41428873_41429936
          Length = 1064

 Score = 1247 bits (645), Expect = 0.0
 Identities = 657/661 (99%), Gaps = 1/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcc-agccctgtctcagtttatcttttatgtgtaacagtggtttagcccatcctt 62
           |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattccaagccctgtcttagtttatcttttatgtgtagcagtggtttagcccatcctt 263

                                                                       
Query: 63  caaatttggcagcatcacaatcctgacagaaagatattacaaaagaagaagctattgtag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaatttggcagcatcacaatcctgacagaaagatattacaaaagaagaagctattgtag 323

                                                                       
Query: 123 tggatttttcctgtcagatttttgaaatggtggaccccaagaaactgaaatatcattctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggatttttcctgtcagatttttgaaatggtggaccccaagaaactgaaatatcattctg 383

                                                                       
Query: 183 gaagtagaaaaagactgaccatgctacccactcagatgtgggatattatctctcaacaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaagtagaaaaagactgaccatgctacccactcagatgtgggatattatctctcaacaaa 443

                                                                       
Query: 243 gacatagttacatcttttcaggccaccttctaggagaaactggagccaagacaagaatgg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacatagttacatcttttcaggccaccttctaggagaaactggagccaagacaagaatgg 503

                                                                       
Query: 303 gccccataatgggtggtaccaagtctggaccacagaagctcaattgcacataattttagc 362
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gccccataatgggtggtcccaagtctggaccacagaagctcaattgcacataattttagc 563

                                                                       
Query: 363 atggtatttaacgtacgccttaggtcagaatcatagacttgaaaagccactagaacctca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atggtatttaacgtacgccttaggtcagaatcatagacttgaaaagccactagaacctca 623

                                                                       
Query: 423 taatttccagtgtggtgatgtgaattaagcctccagtttctgctttgcatgattataaga 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 taatttccagtgtggtgatgtgaattaagcctccagtttctgctttgcatgattataaga 683

                                                                       
Query: 483 ctttttaattgagaaacttatttggtatatattgatggtgtttttcattttcccagctct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctttttaattgagaaacttatttggtatatattgatggtgtttttcattttcccagctct 743

                                                                       
Query: 543 ttccagattctcctcaaacctatttagacattggtcatttcaattggcctattgaagata 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttccagattctcctcaaacctatttagacattggtcatttcaattggcctattgaagata 803

                                                                       
Query: 603 ggtaactggaaatagcatattaggaatgccagaatccaggctctgaccttaacaactcct 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ggtaactggaaatagcatattaggaatgccagaatccaggctctgaccttaacaactcct 863

            
Query: 663 g 663
           |
Sbjct: 864 g 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)