BAC Information

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BAC

Clone NameMSMg01-139M19
Chromosome2 (Build37)
Map Location 26,842,559 - 26,843,189
singlet/doubletsinglet
Overlap geneAdamts13
Upstream geneLOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4
Downstream gene5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5, Rxra, Col5a1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139M19.T7 (MSMg01no139_m19.b1)MSMg01-139M19.TJ (MSMg01no139_m19.g1)
ACCAG345108AG345109
length724728
length of high quality
(start - end)		636 (40 - 675)643 (74 - 716)
definitionCHROMAT_FILE: MSMg01no139_m19.b1 PHD_FILE: MSMg01no139_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:18 2005CHROMAT_FILE: MSMg01no139_m19.g1 PHD_FILE: MSMg01no139_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTATACGACTCCTATATCGAGAGATCCGCGGAATTC
ACTCTGTAGACCAGGCTGGCCTCGAACTCAGACATCTGCCTGCCTCTGCT
TCCCTAGTGCTGGGATCAAAGGCATGTGCCACCATGCCCAGCTCAGACCC
AAGGTTCTTAGCTGCAGGCACAGCCAGAGAGGCAGGACCCAAGTCCTTTG
CTGATCTTGCAAGTCAGTACTGGCAAATGATTTTTTTACTTTATAAATAT
AGAGCAGAGCCAAAGTTGCATCTCTGCTGTCCAGTGAATCCTTCTGCTAG
GACTACAGAGTGGGAAGGAAGAGGTGACCTGACAATTATTCAGAGTCTGC
TACCTCTCTCTCTCTCTTTTTCCCCCTCATCACAGCTACAGTGAGGGACT
TAGTAAGGTGCTACAAACCTGGTTACAGAAGCAGCGTTTCTGGAGTTTGA
TATGTCAGAGAGAAACGAACTGAGATACACAGGGAGGTACCCAGCACTGA
GCCAGCATGTGGGTGCTGTGGCCTGAGTAGTCTAGGCTAATGCTTTGGGT
GCTGGGTTCCTGCAGACTATTAGGAAGCCCACTCTCCACCAGGGCAGGCC
TACCTCTGGCTCTCCCAGCTGTGAAAGAACCATTCCGTGAGCTGCAGGTG
CTGTTGTCTCCTCCACACACCTGGTACGCATCCCAAACCTTCTGGGAGTC
CATCCTGCCATCACAGCCAAAGGT

CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTATAACCCCATTGGACAAGGAATAG
TTGAACATGTTCTTCGCACTTTAAAAATTTGGCTTTTAAAAACAAAACAG
GGGCAGTTATATCCACCAAGGTCACCAAAGGCACATCTTGCTTTTGCTTT
ATTTGTTCGAAATTTTTTGCAAACTGATGTTAAAGGTAAGTCTGCAGCTG
ATCGCCACTGGCATCCAGTTACTTCTAGTTCTTAAGCCATGGTAAAGTGG
TGGGACCCATTAACTAAAGAATGGAAGGGTCCAGACCTGGTCCTAATATG
GGGAAGGGGCTCAGTCTGTGTTTTTTCACAAAAAGAAGACGGAGCGCAAT
GGCTGCCTGAAATATTAGTTCATCAACTGGACACAGATCCTGAATCTTCC
AGTAATTATGACTCTGACCTTGATTATGGCTAAAAATCCTCTTTAACTGA
AAAGTTAATTTGGAGCACAGTCTCTTCTCCCAGAAAAGTTACAGCCTTTC
TGTGATTCTCAAAGCCACCTCCCCCACACCAGGAGCTCAAAGTCTAAGCT
TGGTCATTGCTAATTTGCAATTGAATGGAGTACCTAGACTTCCCAAAAGA
AGCTTTTGTACTATTGCTTTTCAGTCTCCCATTGTTTTTCAAGCAGGTTA
GTCAACACTTCAGCCTGACTGTGGCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_m19.b1 MSMg01no139_m19.b1 CHROMAT_FILE:
MSMg01no139_m19.b1 PHD_FILE: MSMg01no139_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:18 2005
         (636 letters)



>mm_chr2_26842255_26843290
          Length = 1036

 Score = 1197 bits (619), Expect = 0.0
 Identities = 628/631 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcactctgtagaccaggctggcctcgaactcagacatctgcctgcctctgcttcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ggaattcactctgtagaccaggctggcctcgaactcagacatctgcctgcctctgcttcc 876

                                                                       
Query: 65  ctagtgctgggatcaaaggcatgtgccaccatgcccagctcagacccaaggttcttagct 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 ctattgctgggatcaaaggcatgtgccaccatgcccagctcagacccaaggttcttagct 816

                                                                       
Query: 125 gcaggcacagccagagaggcaggacccaagtcctttgctgatcttgcaagtcagtactgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 gcaggcacagccagagaggcaggacccaagtcctttgctgatcttgcaagtcagtactgg 756

                                                                       
Query: 185 caaatgatttttttactttataaatatagagcagagccaaagttgcatctctgctgtcca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 caaatgatttttttactttataaatatagagcagagccaaagttgcatctctgctgtcca 696

                                                                       
Query: 245 gtgaatccttctgctaggactacagagtgggaaggaagaggtgacctgacaattattcag 304
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gtgaatccttctgctgggactacagagtgggaaggaagaggtgacctgacaattattcag 636

                                                                       
Query: 305 agtctgctacctctctctctctctttttccccctcatcacagctacagtgagggacttag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agtctgctacctctctctctctctttttccccctcatcacagctacagtgagggacttag 576

                                                                       
Query: 365 taaggtgctacaaacctggttacagaagcagcgtttctggagtttgatatgtcagagaga 424
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 taaggtgctacaagcctggttacagaagcagcgtttctggagtttgatatgtcagagaga 516

                                                                       
Query: 425 aacgaactgagatacacagggaggtacccagcactgagccagcatgtgggtgctgtggcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacgaactgagatacacagggaggtacccagcactgagccagcatgtgggtgctgtggcc 456

                                                                       
Query: 485 tgagtagtctaggctaatgctttgggtgctgggttcctgcagactattaggaagcccact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgagtagtctaggctaatgctttgggtgctgggttcctgcagactattaggaagcccact 396

                                                                       
Query: 545 ctccaccagggcaggcctacctctggctctcccagctgtgaaagaaccattccgtgagct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctccaccagggcaggcctacctctggctctcccagctgtgaaagaaccattccgtgagct 336

                                          
Query: 605 gcaggtgctgttgtctcctccacacacctgg 635
           |||||||||||||||||||||||||||||||
Sbjct: 335 gcaggtgctgttgtctcctccacacacctgg 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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